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  5. GSVIVT01029553001

GSVIVT01029553001 (PUM5, APUM5)


Aliases : PUM5, APUM5

Description : Pumilio homolog 5 OS=Arabidopsis thaliana


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01029553001
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00251030 APUM2, PUM2,... Pumilio homolog 2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT2G29190 APUM2, PUM2 pumilio 2 0.03 OrthoFinder output from all 47 species
AT3G20250 PUM5, APUM5 pumilio 5 0.03 OrthoFinder output from all 47 species
Adi_g011592 APUM2, PUM2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g011593 PUM1, APUM1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g023994 PUM5, APUM5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g081646 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18472 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61802 PUM1, APUM1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g61874 APUM4, PUM4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g18146 APUM2, PUM2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene56546.t1 APUM4, PUM4,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.18G068300.1 APUM2, PUM2,... not classified & original description: pacid=50621207... 0.02 OrthoFinder output from all 47 species
Ceric.28G029200.1 PUM1, APUM1,... not classified & original description: pacid=50569734... 0.03 OrthoFinder output from all 47 species
Dac_g04724 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g27807 PUM3, APUM3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g48916 APUM2, PUM2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Gb_30039 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_31285 APUM2, PUM2 Pumilio homolog 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os08g40830.1 LOC_Os08g40830 Pumilio homolog 5 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Lfl_g10215 APUM4, PUM4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10159883g0010 PUM5, APUM5 Pumilio homolog 5 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_10434828g0010 APUM2, PUM2 Pumilio homolog 2 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
MA_42218g0010 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
MA_9025256g0010 PUM5, APUM5 Pumilio homolog 5 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Mp7g16700.1 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Msp_g15559 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g08859 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06503 APUM2, PUM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g10568 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo1983 APUM4, PUM4 Pumilio homolog 1 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Smo86145 APUM4, PUM4 Pumilio homolog 1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Solyc03g123980.4.1 PUM5, APUM5,... Pumilio homolog 5 OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
Spa_g55430 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e021916_P002 APUM6, PUM6,... Pumilio homolog 5 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR012940 NABP 464 696
IPR001313 Pumilio_RNA-bd_rpt 772 802
IPR001313 Pumilio_RNA-bd_rpt 806 839
IPR001313 Pumilio_RNA-bd_rpt 842 874
IPR001313 Pumilio_RNA-bd_rpt 735 765
IPR001313 Pumilio_RNA-bd_rpt 959 989
IPR001313 Pumilio_RNA-bd_rpt 700 727
IPR001313 Pumilio_RNA-bd_rpt 915 947
No external refs found!