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  5. GSVIVT01029248001

GSVIVT01029248001


Description : Pentatricopeptide repeat-containing protein At2g18940, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0006045 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006045_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01029248001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g18940,... 0.04 OrthoFinder output from all 47 species
Adi_g060882 No alias stability factor *(PPR10) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.12G078600.1 Ceric.12G078600 stability factor *(PPR10) & original description:... 0.04 OrthoFinder output from all 47 species
Dcu_g12598 No alias stability factor *(PPR10) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g13980 EMB1270 stability factor *(PPR10) & original description: none 0.06 OrthoFinder output from all 47 species
MA_8893308g0010 No alias plastidial mRNA processing factor (PPR10) 0.05 OrthoFinder output from all 47 species
Solyc01g107320.3.1 Solyc01g107320 plastidial mRNA processing factor (PPR10) 0.06 OrthoFinder output from all 47 species
Spa_g11381 No alias stability factor *(PPR10) & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0015969 guanosine tetraphosphate metabolic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 281 310
IPR002885 Pentatricopeptide_repeat 695 727
IPR002885 Pentatricopeptide_repeat 733 782
IPR002885 Pentatricopeptide_repeat 315 354
IPR002885 Pentatricopeptide_repeat 523 572
IPR002885 Pentatricopeptide_repeat 618 675
IPR002885 Pentatricopeptide_repeat 195 257
IPR002885 Pentatricopeptide_repeat 443 501
IPR002885 Pentatricopeptide_repeat 374 432
No external refs found!