LOC_Os04g36054.1


Description : transcription factor (ARF)


Gene families : OG_01_0000080 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000080_tree ,
OG_02_0000395 (LandPlants) Phylogenetic Tree(s): OG_02_0000395_tree ,
OG_03_0003855 (SeedPlants) Phylogenetic Tree(s): OG_03_0003855_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g36054.1
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00157690 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
AMTR_s00034p00110140 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
AMTR_s00092p00072950 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
AT1G19220 ARF19, IAA22, ARF11 auxin response factor 19 0.04 Archaeplastida
AT1G59750 ARF1 auxin response factor 1 0.04 Archaeplastida
AT5G37020 ARF8, ATARF8 auxin response factor 8 0.02 Archaeplastida
AT5G60450 ARF4 auxin response factor 4 0.07 Archaeplastida
GSVIVT01021552001 No alias RNA biosynthesis.transcriptional activation.B3... 0.05 Archaeplastida
GSVIVT01025159001 No alias RNA biosynthesis.transcriptional activation.B3... 0.02 Archaeplastida
GSVIVT01025198001 No alias RNA biosynthesis.transcriptional activation.B3... 0.06 Archaeplastida
Gb_23186 No alias transcription factor (ARF) 0.03 Archaeplastida
Gb_32864 No alias transcription factor (ARF) 0.02 Archaeplastida
Gb_39685 No alias transcription factor (ARF) 0.05 Archaeplastida
Gb_39686 No alias transcription factor (ARF) 0.05 Archaeplastida
LOC_Os04g56850.1 No alias transcription factor (ARF) 0.05 Archaeplastida
MA_10432580g0010 No alias transcription factor (ARF) 0.04 Archaeplastida
MA_137387g0010 No alias no hits & (original description: none) 0.07 Archaeplastida
MA_40335g0010 No alias transcription factor (ARF) 0.04 Archaeplastida
MA_85955g0020 No alias transcription factor (ARF) 0.03 Archaeplastida
Mp2g02890.1 No alias Auxin response factor 19 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Pp3c14_16990V3.1 No alias auxin response factor 6 0.03 Archaeplastida
Pp3c17_19900V3.1 No alias auxin response factor 6 0.02 Archaeplastida
Pp3c1_14480V3.1 No alias auxin response factor 6 0.03 Archaeplastida
Pp3c26_11550V3.1 No alias auxin response factor 6 0.02 Archaeplastida
Pp3c5_9420V3.1 No alias auxin response factor 2 0.03 Archaeplastida
Solyc03g118290.3.1 No alias transcription factor (ARF) 0.03 Archaeplastida
Solyc04g081240.2.1 No alias transcription factor (ARF) 0.04 Archaeplastida
Solyc07g016180.3.1 No alias transcription factor (ARF) 0.03 Archaeplastida
Solyc08g008380.4.1 No alias transcription factor (ARF) 0.03 Archaeplastida
Solyc08g082630.3.1 No alias transcription factor (ARF) 0.05 Archaeplastida
Zm00001e006640_P002 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e013639_P001 No alias transcription factor (ARF) 0.04 Archaeplastida
Zm00001e028396_P001 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e030325_P003 No alias transcription factor (ARF) 0.08 Archaeplastida
Zm00001e041866_P001 No alias transcription factor (ARF) 0.03 Archaeplastida
AMTR_s00021p00200760 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.02 LandPlants
AT5G60450 ARF4 auxin response factor 4 0.04 LandPlants
GSVIVT01008639001 No alias RNA biosynthesis.transcriptional activation.B3... 0.02 LandPlants
GSVIVT01025159001 No alias RNA biosynthesis.transcriptional activation.B3... 0.02 LandPlants
Gb_23186 No alias transcription factor (ARF) 0.03 LandPlants
Gb_31132 No alias transcription factor (ARF) 0.02 LandPlants
MA_10432580g0010 No alias transcription factor (ARF) 0.04 LandPlants
MA_40335g0010 No alias transcription factor (ARF) 0.04 LandPlants
Pp3c5_9420V3.1 No alias auxin response factor 2 0.03 LandPlants
Solyc03g118290.3.1 No alias transcription factor (ARF) 0.03 LandPlants
Solyc08g008380.4.1 No alias transcription factor (ARF) 0.03 LandPlants
Solyc08g082630.3.1 No alias transcription factor (ARF) 0.05 LandPlants
Solyc11g069190.2.1 No alias transcription factor (ARF) 0.02 LandPlants
Zm00001e028396_P001 No alias transcription factor (ARF) 0.03 LandPlants
AMTR_s00021p00221770 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.02 SeedPlants
AT3G61830 ARF18 auxin response factor 18 0.01 SeedPlants
GSVIVT01023149001 No alias RNA biosynthesis.transcriptional activation.B3... 0.02 SeedPlants
Zm00001e008040_P002 No alias transcription factor (ARF) 0.06 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR033389 AUX/IAA_dom 595 638
IPR033389 AUX/IAA_dom 537 583
IPR003340 B3_DNA-bd 126 226
IPR010525 Auxin_resp 252 337
No external refs found!