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  5. GSVIVT01028448001

GSVIVT01028448001


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.ITS1 rRNA removal.BRX1 assembly factor


Gene families : OG0005675 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005675_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01028448001
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00215770 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 OrthoFinder output from all 47 species
AT1G52930 No alias Ribosomal RNA processing Brix domain protein 0.09 OrthoFinder output from all 47 species
AT3G15460 No alias Ribosomal RNA processing Brix domain protein 0.06 OrthoFinder output from all 47 species
Adi_g045878 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.02 OrthoFinder output from all 47 species
Aop_g02466 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001206.16 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder output from all 47 species
Cre02.g095400 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Gb_30311 No alias BRX1 assembly factor involved in ITS1 rRNA removal 0.06 OrthoFinder output from all 47 species
LOC_Os02g37870.1 LOC_Os02g37870 BRX1 assembly factor involved in ITS1 rRNA removal 0.03 OrthoFinder output from all 47 species
Len_g16692 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.07 OrthoFinder output from all 47 species
MA_14692g0010 No alias BRX1 assembly factor involved in ITS1 rRNA removal 0.06 OrthoFinder output from all 47 species
Mp4g04670.1 No alias BRX1 assembly factor involved in ITS1 rRNA removal 0.05 OrthoFinder output from all 47 species
Pp3c16_10600V3.1 Pp3c16_10600 Ribosomal RNA processing Brix domain protein 0.02 OrthoFinder output from all 47 species
Smo66840 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Solyc04g016380.3.1 Solyc04g016380 BRX1 assembly factor involved in ITS1 rRNA removal 0.07 OrthoFinder output from all 47 species
Tin_g03875 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.03 OrthoFinder output from all 47 species
Zm00001e022842_P003 Zm00001e022842 BRX1 assembly factor involved in ITS1 rRNA removal 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR007109 Brix 62 251
No external refs found!