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  5. GSVIVT01028192001

GSVIVT01028192001


Description : RNA biosynthesis.transcriptional activation.DBP transcription factor


Gene families : OG0000632 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000632_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01028192001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00195190 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.DBP... 0.09 OrthoFinder output from all 47 species
AT3G62260 No alias Protein phosphatase 2C family protein 0.07 OrthoFinder output from all 47 species
Adi_g023836 No alias clade G phosphatase *(DBP) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g057511 No alias clade G phosphatase *(DBP) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g065482 AtDBP1, DBP1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g066815 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g26423 No alias clade G phosphatase *(DBP) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g23337 AtDBP1, DBP1 clade G phosphatase *(DBP) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g51622 No alias clade G phosphatase *(DBP) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g16830 No alias clade G phosphatase *(DBP) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g22591 AtDBP1, DBP1 clade G phosphatase *(DBP) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07787 No alias clade G phosphatase *(DBP) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene03511.t1 Aspi01Gene03511 clade G phosphatase *(DBP) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene05677.t1 AtDBP1, DBP1,... clade G phosphatase *(DBP) & original description: none 0.06 OrthoFinder output from all 47 species
Azfi_s0163.g054219 No alias clade G phosphatase *(DBP) & original description: CDS=374-1630 0.04 OrthoFinder output from all 47 species
Azfi_s3252.g115111 No alias clade G phosphatase *(DBP) & original description: CDS=374-1630 0.03 OrthoFinder output from all 47 species
Ceric.09G079600.1 AtDBP1, DBP1,... clade G phosphatase *(DBP) & original description:... 0.06 OrthoFinder output from all 47 species
Dac_g45651 No alias clade G phosphatase *(DBP) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g19762 No alias clade G phosphatase *(DBP) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g09598 No alias clade G phosphatase *(DBP) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g21633 No alias clade G phosphatase *(DBP) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g07905 No alias clade G phosphatase *(DBP) & original description: none 0.02 OrthoFinder output from all 47 species
Gb_16142 No alias transcription factor (DBP). clade G phosphatase 0.09 OrthoFinder output from all 47 species
LOC_Os01g19130.1 LOC_Os01g19130 transcription factor (DBP) 0.05 OrthoFinder output from all 47 species
LOC_Os10g39540.1 LOC_Os10g39540 transcription factor (DBP). clade G phosphatase 0.01 OrthoFinder output from all 47 species
Len_g08148 AtDBP1, DBP1 clade G phosphatase *(DBP) & original description: none 0.07 OrthoFinder output from all 47 species
Len_g55507 No alias clade G phosphatase *(DBP) & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g26900 No alias clade G phosphatase *(DBP) & original description: none 0.02 OrthoFinder output from all 47 species
MA_16483g0010 No alias transcription factor (DBP) 0.04 OrthoFinder output from all 47 species
MA_185497g0010 No alias transcription factor (DBP). clade G phosphatase 0.03 OrthoFinder output from all 47 species
Msp_g19202 No alias clade G phosphatase *(DBP) & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g09163 No alias clade G phosphatase *(DBP) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g29146 No alias clade G phosphatase *(DBP) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g49420 No alias clade G phosphatase *(DBP) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000643 No alias clade G phosphatase *(DBP) & original description: CDS=685-1845 0.03 OrthoFinder output from all 47 species
Solyc01g068000.4.1 Solyc01g068000 transcription factor (DBP) 0.11 OrthoFinder output from all 47 species
Solyc05g053290.3.1 Solyc05g053290 transcription factor (DBP) 0.02 OrthoFinder output from all 47 species
Solyc06g009390.3.1 Solyc06g009390 transcription factor (DBP) 0.04 OrthoFinder output from all 47 species
Spa_g22865 AtDBP1, DBP1 clade G phosphatase *(DBP) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g24550 AtDBP1, DBP1 clade G phosphatase *(DBP) & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g46551 AtDBP1, DBP1 clade G phosphatase *(DBP) & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g54548 No alias clade G phosphatase *(DBP) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g57303 AtDBP1, DBP1 clade G phosphatase *(DBP) & original description: none 0.08 OrthoFinder output from all 47 species
Tin_g27710 No alias clade G phosphatase *(DBP) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e025432_P001 Zm00001e025432 transcription factor (DBP) 0.06 OrthoFinder output from all 47 species
Zm00001e040337_P001 Zm00001e040337 transcription factor (DBP) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010215 cellulose microfibril organization IEP HCCA
BP GO:0016049 cell growth IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0030198 extracellular matrix organization IEP HCCA
CC GO:0031225 obsolete anchored component of membrane IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0040007 growth IEP HCCA
BP GO:0043062 extracellular structure organization IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR001932 PPM-type_phosphatase-like_dom 95 347
No external refs found!