Aliases : PMS1
Description : DNA damage response.DNA repair mechanisms.mismatch repair (MMR).MLH1-PMS1 heterodimer.PMS1 component
Gene families : OG0005197 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005197_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00045p00213360 | PMS1,... | DNA damage response.DNA repair mechanisms.mismatch... | 0.02 | OrthoFinder output from all 47 species | |
AT4G02460 | PMS1 | DNA mismatch repair protein, putative | 0.06 | OrthoFinder output from all 47 species | |
Aspi01Gene67732.t1 | PMS1, Aspi01Gene67732 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ceric.21G086600.1 | PMS1, Ceric.21G086600 | component *(PMS1) of MLH1-PMS1 heterodimer & original... | 0.05 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000057.93 | PMS1 | DNA mismatch repair protein PMS1 OS=Arabidopsis thaliana | 0.01 | OrthoFinder output from all 47 species | |
Cre04.g227000 | PMS1 | DNA damage response.DNA repair mechanisms.mismatch... | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os02g37920.1 | PMS1, LOC_Os02g37920 | component PMS1 of MLH1-PMS1 heterodimer | 0.08 | OrthoFinder output from all 47 species | |
Len_g24503 | PMS1 | component *(PMS1) of MLH1-PMS1 heterodimer & original... | 0.06 | OrthoFinder output from all 47 species | |
Sam_g14037 | No alias | component *(PMS1) of MLH1-PMS1 heterodimer & original... | 0.03 | OrthoFinder output from all 47 species | |
Solyc09g074990.4.1 | PMS1, Solyc09g074990 | component PMS1 of MLH1-PMS1 heterodimer | 0.09 | OrthoFinder output from all 47 species | |
Tin_g08739 | PMS1 | component *(PMS1) of MLH1-PMS1 heterodimer & original... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e022851_P002 | PMS1, Zm00001e022851 | component PMS1 of MLH1-PMS1 heterodimer | 0.06 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005524 | ATP binding | IEA | Interproscan |
BP | GO:0006298 | mismatch repair | IEA | Interproscan |
MF | GO:0030983 | mismatched DNA binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
MF | GO:0003916 | DNA topoisomerase activity | IEP | HCCA |
MF | GO:0003917 | DNA topoisomerase type I (single strand cut, ATP-independent) activity | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
CC | GO:0005575 | cellular_component | IEP | HCCA |
CC | GO:0005634 | nucleus | IEP | HCCA |
CC | GO:0005643 | nuclear pore | IEP | HCCA |
CC | GO:0005694 | chromosome | IEP | HCCA |
BP | GO:0006265 | DNA topological change | IEP | HCCA |
BP | GO:0006996 | organelle organization | IEP | HCCA |
MF | GO:0008092 | cytoskeletal protein binding | IEP | HCCA |
BP | GO:0009890 | negative regulation of biosynthetic process | IEP | HCCA |
BP | GO:0009892 | negative regulation of metabolic process | IEP | HCCA |
BP | GO:0010558 | negative regulation of macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | HCCA |
MF | GO:0015631 | tubulin binding | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0031324 | negative regulation of cellular metabolic process | IEP | HCCA |
BP | GO:0031327 | negative regulation of cellular biosynthetic process | IEP | HCCA |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
MF | GO:0043015 | gamma-tubulin binding | IEP | HCCA |
CC | GO:0043226 | organelle | IEP | HCCA |
CC | GO:0043227 | membrane-bounded organelle | IEP | HCCA |
CC | GO:0043229 | intracellular organelle | IEP | HCCA |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | HCCA |
BP | GO:0045892 | negative regulation of DNA-templated transcription | IEP | HCCA |
BP | GO:0045934 | negative regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
BP | GO:0048523 | negative regulation of cellular process | IEP | HCCA |
BP | GO:0051172 | negative regulation of nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0051253 | negative regulation of RNA metabolic process | IEP | HCCA |
BP | GO:0051276 | chromosome organization | IEP | HCCA |
BP | GO:0051726 | regulation of cell cycle | IEP | HCCA |
BP | GO:0071103 | DNA conformation change | IEP | HCCA |
MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
BP | GO:1902679 | negative regulation of RNA biosynthetic process | IEP | HCCA |
BP | GO:1903507 | negative regulation of nucleic acid-templated transcription | IEP | HCCA |
No external refs found! |