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  5. GSVIVT01027645001

GSVIVT01027645001


Description : RNA biosynthesis.transcriptional activation.PLATZ transcription factor


Gene families : OG0000228 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000228_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01027645001
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00208550 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PLATZ... 0.02 OrthoFinder output from all 47 species
Adi_g050234 No alias PLATZ-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g47406 No alias PLATZ-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g46803 No alias PLATZ-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene13991.t2 Aspi01Gene13991 PLATZ-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene30908.t1 Aspi01Gene30908 PLATZ-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene32259.t1 Aspi01Gene32259 PLATZ-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44972.t1 Aspi01Gene44972 PLATZ-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene49362.t1 Aspi01Gene49362 PLATZ-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g55499 No alias PLATZ-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.13G040100.1 Ceric.13G040100 PLATZ-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.23G020700.1 Ceric.23G020700 PLATZ-type transcription factor & original description:... 0.05 OrthoFinder output from all 47 species
Cre02.g095950 No alias RNA biosynthesis.transcriptional activation.PLATZ... 0.02 OrthoFinder output from all 47 species
GSVIVT01012050001 No alias RNA biosynthesis.transcriptional activation.PLATZ... 0.04 OrthoFinder output from all 47 species
Gb_01198 No alias transcription factor (PLATZ) 0.02 OrthoFinder output from all 47 species
Gb_13705 No alias transcription factor (PLATZ) 0.05 OrthoFinder output from all 47 species
Lfl_g16678 No alias PLATZ-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g37520 No alias PLATZ-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_12209g0020 No alias transcription factor (PLATZ) 0.02 OrthoFinder output from all 47 species
MA_14309g0010 No alias transcription factor (PLATZ) 0.07 OrthoFinder output from all 47 species
Nbi_g24269 No alias PLATZ-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g27586 No alias PLATZ-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g24743 No alias PLATZ-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002735 No alias PLATZ-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0194.g025441 No alias not classified & original description: CDS=1-1005 0.03 OrthoFinder output from all 47 species
Sam_g24805 No alias PLATZ-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Smo425306 No alias RNA biosynthesis.transcriptional activation.PLATZ... 0.03 OrthoFinder output from all 47 species
Solyc01g091000.4.1 Solyc01g091000 transcription factor (PLATZ) 0.06 OrthoFinder output from all 47 species
Zm00001e013748_P001 Zm00001e013748 transcription factor (PLATZ) 0.03 OrthoFinder output from all 47 species
Zm00001e037743_P001 Zm00001e037743 transcription factor (PLATZ) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006471 obsolete protein ADP-ribosylation IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006734 PLATZ 62 133
No external refs found!