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  5. GSVIVT01027613001

GSVIVT01027613001 (PBF1)


Aliases : PBF1

Description : Protein degradation.26S proteasome.20S core protease.beta-type subunits.beta type-6 component


Gene families : OG0004409 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004409_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01027613001
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00220020 PBF1,... Protein degradation.26S proteasome.20S core... 0.03 OrthoFinder output from all 47 species
AT3G60820 PBF1 N-terminal nucleophile aminohydrolases (Ntn hydrolases)... 0.07 OrthoFinder output from all 47 species
Adi_g015227 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Aev_g01998 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Ala_g08818 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Als_g08527 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Aop_g00288 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.09 OrthoFinder output from all 47 species
Azfi_s0392.g067771 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.06 OrthoFinder output from all 47 species
Ceric.24G072400.1 PBF1, Ceric.24G072400 beta-type-6 component *(PBF) of 26S proteasome &... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001339.5 PBF1 Protein degradation.26S proteasome.20S core... 0.05 OrthoFinder output from all 47 species
Cre26.g756797 PBF1 Protein degradation.26S proteasome.20S core... 0.1 OrthoFinder output from all 47 species
Dac_g02574 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.12 OrthoFinder output from all 47 species
Dcu_g00884 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.08 OrthoFinder output from all 47 species
Dde_g01948 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Ehy_g28912 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Gb_25087 PBF1 component beta type-6 of 26S proteasome 0.05 OrthoFinder output from all 47 species
LOC_Os08g41730.1 PBF1, LOC_Os08g41730 component beta type-6 of 26S proteasome 0.04 OrthoFinder output from all 47 species
LOC_Os09g32800.1 PBF1, LOC_Os09g32800 component beta type-6 of 26S proteasome 0.07 OrthoFinder output from all 47 species
Len_g10197 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Len_g17930 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Mp1g12450.1 PBF1 component beta type-6 of 26S proteasome 0.11 OrthoFinder output from all 47 species
Msp_g43692 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.07 OrthoFinder output from all 47 species
Nbi_g43343 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Pp3c16_16960V3.1 PBF1, Pp3c16_16960 N-terminal nucleophile aminohydrolases (Ntn hydrolases)... 0.07 OrthoFinder output from all 47 species
Smo94273 PBF1 Protein degradation.26S proteasome.20S core... 0.04 OrthoFinder output from all 47 species
Solyc02g084920.3.1 PBF1, Solyc02g084920 component beta type-6 of 26S proteasome 0.13 OrthoFinder output from all 47 species
Spa_g13091 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Spa_g16539 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.06 OrthoFinder output from all 47 species
Tin_g30516 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.06 OrthoFinder output from all 47 species
Zm00001e010121_P001 PBF1, Zm00001e010121 component beta type-6 of 26S proteasome 0.05 OrthoFinder output from all 47 species
Zm00001e034624_P005 PBF1, Zm00001e034624 component beta type-6 of 26S proteasome 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004298 threonine-type endopeptidase activity IEA Interproscan
CC GO:0005839 proteasome core complex IEA Interproscan
BP GO:0051603 proteolysis involved in protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005741 mitochondrial outer membrane IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001353 Proteasome_sua/b 13 207
No external refs found!