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  5. GSVIVT01027514001

GSVIVT01027514001 (AtPP2-A13, PP2-A13)


Aliases : AtPP2-A13, PP2-A13

Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ligase complexes.F-BOX substrate adaptor components.FBX component


Gene families : OG0000279 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000279_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01027514001
Cluster HCCA: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00139470 AtPP2-B1,... F-box protein At2g02240 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT3G61060 AtPP2-A13, PP2-A13 phloem protein 2-A13 0.06 OrthoFinder output from all 47 species
Azfi_s0229.g059124 No alias not classified & original description: CDS=133-1170 0.03 OrthoFinder output from all 47 species
Azfi_s0322.g064522 No alias not classified & original description: CDS=100-843 0.03 OrthoFinder output from all 47 species
Cba_g09552 MEE66 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g21011 ATPP2-B11, PP2-B11 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g18479 MEE66 not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_7604366g0010 AtPP2-B6, PP2-B6 F-box protein PP2-B11 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_855616g0010 MEE66 F-box protein PP2-A15 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Pir_g35801 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g08930 AtPP2-B8, PP2-B8 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc05g053620.3.1 AtPP2-B10,... Putative F-box protein PP2-B12 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc10g017960.2.1 AtPP2-A13,... component FBX of SCF E3 ubiquitin ligase complex 0.03 OrthoFinder output from all 47 species
Zm00001e000116_P001 AtPP2-A13,... component FBX of SCF E3 ubiquitin ligase complex 0.03 OrthoFinder output from all 47 species
Zm00001e034748_P001 AtPP2-A13,... component FBX of SCF E3 ubiquitin ligase complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR025886 PP2-like 120 278
No external refs found!