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Aliases : CCA1
Description : Multi-process regulation.circadian clock.core oscillator protein (LHY, CCA1)
Gene families : OG0000435 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000435_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00001p00272270 | LHY1, LHY,... | Multi-process regulation.circadian clock.core oscillator... | 0.07 | OrthoFinder output from all 47 species | |
| AMTR_s00044p00072910 | RVE2, CIR1,... | RNA biosynthesis.transcriptional activation.MYB... | 0.06 | OrthoFinder output from all 47 species | |
| AT1G01060 | LHY1, LHY | Homeodomain-like superfamily protein | 0.1 | OrthoFinder output from all 47 species | |
| AT2G46830 | CCA1 | circadian clock associated 1 | 0.1 | OrthoFinder output from all 47 species | |
| AT3G09600 | No alias | Homeodomain-like superfamily protein | 0.09 | OrthoFinder output from all 47 species | |
| AT4G01280 | No alias | Homeodomain-like superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
| AT5G17300 | RVE1 | Homeodomain-like superfamily protein | 0.07 | OrthoFinder output from all 47 species | |
| AT5G52660 | No alias | Homeodomain-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g30544 | No alias | transcription factor *(REVEILLE) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g15171 | RVE1 | circadian clock core oscillator protein *(LHY/CCA1) &... | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g01863 | No alias | circadian clock factor *(REVEILLE) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g13615 | RVE2, CIR1 | transcription factor *(REVEILLE) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aspi01Gene01893.t1 | Aspi01Gene01893 | transcription factor *(REVEILLE) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aspi01Gene31403.t1 | RVE1, Aspi01Gene31403 | transcription factor *(REVEILLE) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aspi01Gene50879.t1 | Aspi01Gene50879 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0001.g000277 | No alias | circadian clock factor *(REVEILLE) & original... | 0.06 | OrthoFinder output from all 47 species | |
| Azfi_s0005.g008971 | RVE1 | transcription factor *(REVEILLE) & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0042.g026930 | CCA1 | circadian clock core oscillator protein *(LHY/CCA1) &... | 0.07 | OrthoFinder output from all 47 species | |
| Cba_g24529 | No alias | circadian clock factor *(REVEILLE) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.04G087900.1 | RVE2, CIR1,... | transcription factor *(REVEILLE) & original description:... | 0.11 | OrthoFinder output from all 47 species | |
| Ceric.06G032400.1 | RVE2, CIR1,... | transcription factor *(REVEILLE) & original description:... | 0.08 | OrthoFinder output from all 47 species | |
| Ceric.07G057200.1 | RVE1, Ceric.07G057200 | transcription factor *(REVEILLE) & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g22032 | RVE1 | transcription factor *(REVEILLE) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g23475 | RVE1 | circadian clock core oscillator protein *(LHY/CCA1) &... | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g09144 | RVE1 | transcription factor *(REVEILLE) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os02g45670.1 | LOC_Os02g45670 | transcription factor (MYB-related). REVEILLE circadian... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os06g01670.1 | LOC_Os06g01670 | transcription factor (MYB-related). REVEILLE circadian... | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os06g51260.1 | RVE2, CIR1,... | transcription factor (MYB-related) | 0.07 | OrthoFinder output from all 47 species | |
| LOC_Os08g06110.3 | LHY1, LHY, LOC_Os08g06110 | transcription factor (MYB-related). circadian clock core... | 0.08 | OrthoFinder output from all 47 species | |
| Len_g19700 | RVE1 | transcription factor *(REVEILLE) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Len_g21851 | RVE1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g26311 | RVE2, CIR1 | transcription factor *(REVEILLE) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g28300 | EPR1, RVE7 | transcription factor *(REVEILLE) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g42013 | RVE2, CIR1 | transcription factor *(REVEILLE) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g51660 | No alias | circadian clock factor *(REVEILLE) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Smo166821 | No alias | Multi-process regulation.circadian clock.core oscillator... | 0.06 | OrthoFinder output from all 47 species | |
| Solyc03g098320.4.1 | RVE1, Solyc03g098320 | transcription factor (MYB-related) | 0.17 | OrthoFinder output from all 47 species | |
| Solyc10g005080.3.1 | LHY1, LHY, Solyc10g005080 | transcription factor (MYB-related). circadian clock core... | 0.08 | OrthoFinder output from all 47 species | |
| Solyc10g084370.3.1 | Solyc10g084370 | transcription factor (MYB-related). REVEILLE circadian... | 0.17 | OrthoFinder output from all 47 species | |
| Spa_g16159 | No alias | transcription factor *(REVEILLE) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e013333_P002 | RVE2, CIR1,... | transcription factor (MYB-related) | 0.12 | OrthoFinder output from all 47 species | |
| Zm00001e021724_P005 | LHY1, LHY, Zm00001e021724 | transcription factor (MYB-related). circadian clock core... | 0.12 | OrthoFinder output from all 47 species | |
| Zm00001e023232_P002 | Zm00001e023232 | transcription factor (MYB-related). REVEILLE circadian... | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e040217_P001 | LHY1, LHY, Zm00001e040217 | circadian clock core oscillator protein (LHY|CCA1) | 0.1 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0006952 | defense response | IEP | HCCA |
| MF | GO:0051536 | iron-sulfur cluster binding | IEP | HCCA |
| MF | GO:0051537 | 2 iron, 2 sulfur cluster binding | IEP | HCCA |
| MF | GO:0051540 | metal cluster binding | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001005 | SANT/Myb | 24 | 67 |
| No external refs found! |