GSVIVT01027153001

Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.SINA-type E3 ligase

Gene families : OG0000462 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000462_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01027153001

Target	Alias	Description	ECC score	Gene Family Method
Als_g15041	No alias	E3 ubiquitin ligase *(SINA) & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g08299	No alias	E3 ubiquitin ligase *(SINA) & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g15020	No alias	E3 ubiquitin ligase *(SINA) & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os01g03290.1	LOC_Os01g03290	Putative E3 ubiquitin-protein ligase SINA-like 6...	0.03	OrthoFinder output from all 47 species
LOC_Os01g13370.1	LOC_Os01g13370	SINA-class E3 ligase	0.03	OrthoFinder output from all 47 species
Len_g31151	No alias	E3 ubiquitin ligase *(SINA) & original description: none	0.03	OrthoFinder output from all 47 species
MA_79290g0010	No alias	SINA-class E3 ligase	0.03	OrthoFinder output from all 47 species
Solyc00g500091.1.1	Solyc00g500091	SINA-class E3 ligase	0.03	OrthoFinder output from all 47 species
Spa_g09487	No alias	E3 ubiquitin ligase *(SINA) & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007275	multicellular organism development	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0050662	obsolete coenzyme binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR018121	7-in-absentia-prot_TRAF-dom	64	173

External Links

No external refs found!

GSVIVT01027153001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation