- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
No description available
Gene families : OG0003214 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003214_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01027074001 | |
| Cluster | HCCA: Cluster_58 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s01196p00010070 | PSBC,... | Photosystem II CP43 reaction center protein OS=Carica papaya | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s04036p00005710 | evm_27.TU.AmTr_v1... | Photosystem II CP43 reaction center protein... | 0.03 | OrthoFinder output from all 47 species | |
| ATCG00280 | PSBC | photosystem II reaction center protein C | 0.06 | OrthoFinder output from all 47 species | |
| Aev_g04878 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.07 | OrthoFinder output from all 47 species | |
| Als_g01018 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g06735 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.06 | OrthoFinder output from all 47 species | |
| Ceric.02G013100.1 | PSBC, Ceric.02G013100 | component *(PsbC/CP43) of PS-II reaction center complex... | 0.06 | OrthoFinder output from all 47 species | |
| Ceric.12G058500.1 | PSBC, Ceric.12G058500 | not classified & original description: pacid=50601680... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.12G087100.1 | PSBC, Ceric.12G087100 | not classified & original description: pacid=50602384... | 0.06 | OrthoFinder output from all 47 species | |
| Ceric.1Z161200.1 | PSBC, Ceric.1Z161200 | component *(PsbC/CP43) of PS-II reaction center complex... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.24G024100.1 | PSBC, Ceric.24G024100 | component *(PsbC/CP43) of PS-II reaction center complex... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.33G023300.1 | PSBC, Ceric.33G023300 | component *(PsbC/CP43) of PS-II reaction center complex... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.36G045000.1 | PSBC, Ceric.36G045000 | not classified & original description: pacid=50568984... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.38G009700.1 | PSBC, Ceric.38G009700 | component *(PsbC/CP43) of PS-II reaction center complex... | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g10666 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01006662001 | PSBC | Photosystem II CP43 reaction center protein OS=Platanus... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_06826 | PSBC | Photosystem II CP43 reaction center protein OS=Cycas... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_11943 | PSBC | Photosystem II CP43 reaction center protein... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_19153 | PSBC | Photosystem II CP43 reaction center protein... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_22672 | PSBC | Photosystem II CP43 reaction center protein... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os02g24632.1 | PSBC, LOC_Os02g24632 | component PsbC/CP43 of PS-II reaction center complex | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os04g16874.1 | PSBC, LOC_Os04g16874 | component PsbC/CP43 of PS-II reaction center complex | 0.07 | OrthoFinder output from all 47 species | |
| LOC_Os10g21212.1 | PSBC, LOC_Os10g21212 | component PsbC/CP43 of PS-II reaction center complex | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g10242 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.05 | OrthoFinder output from all 47 species | |
| Nbi_g01251 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g02105 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.08 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0004.g002255 | PSBC | not classified & original description: CDS=1-627 | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0010.g004817 | PSBC | not classified & original description: CDS=1-717 | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0015.g006637 | PSBC | not classified & original description: CDS=1-525 | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0015.g006638 | PSBC | not classified & original description: CDS=1-420 | 0.04 | OrthoFinder output from all 47 species | |
| Smo137689 | PSBC | Photosynthesis.photophosphorylation.photosystem II.PS-II... | 0.06 | OrthoFinder output from all 47 species | |
| Solyc00g230070.1.1 | PSBC, Solyc00g230070 | Photosystem II CP43 reaction center protein OS=Lepidium... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc00g500054.1.1 | PSBC, Solyc00g500054 | component PsbD/D2 of PS-II reaction center complex.... | 0.07 | OrthoFinder output from all 47 species | |
| Solyc00g500136.1.1 | PSBC, Solyc00g500136 | component PsbD/D2 of PS-II reaction center complex.... | 0.07 | OrthoFinder output from all 47 species | |
| Solyc00g500206.1.1 | PSBC, Solyc00g500206 | component PsbD/D2 of PS-II reaction center complex.... | 0.07 | OrthoFinder output from all 47 species | |
| Solyc12g027550.2.1 | PSBC, Solyc12g027550 | Photosystem II CP43 reaction center protein OS=Nicotiana... | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g01229 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000096 | sulfur amino acid metabolic process | IEP | HCCA |
| BP | GO:0000097 | sulfur amino acid biosynthetic process | IEP | HCCA |
| MF | GO:0003871 | 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity | IEP | HCCA |
| MF | GO:0004144 | diacylglycerol O-acyltransferase activity | IEP | HCCA |
| BP | GO:0006555 | methionine metabolic process | IEP | HCCA |
| BP | GO:0006790 | sulfur compound metabolic process | IEP | HCCA |
| MF | GO:0008168 | methyltransferase activity | IEP | HCCA |
| MF | GO:0008172 | S-methyltransferase activity | IEP | HCCA |
| MF | GO:0008374 | O-acyltransferase activity | IEP | HCCA |
| BP | GO:0008652 | amino acid biosynthetic process | IEP | HCCA |
| BP | GO:0009066 | aspartate family amino acid metabolic process | IEP | HCCA |
| BP | GO:0009067 | aspartate family amino acid biosynthetic process | IEP | HCCA |
| BP | GO:0009086 | methionine biosynthetic process | IEP | HCCA |
| MF | GO:0015078 | proton transmembrane transporter activity | IEP | HCCA |
| BP | GO:0016053 | organic acid biosynthetic process | IEP | HCCA |
| MF | GO:0016411 | acylglycerol O-acyltransferase activity | IEP | HCCA |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | HCCA |
| CC | GO:0033177 | proton-transporting two-sector ATPase complex, proton-transporting domain | IEP | HCCA |
| MF | GO:0042085 | 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity | IEP | HCCA |
| BP | GO:0044272 | sulfur compound biosynthetic process | IEP | HCCA |
| BP | GO:0046394 | carboxylic acid biosynthetic process | IEP | HCCA |
| BP | GO:1901605 | alpha-amino acid metabolic process | IEP | HCCA |
| BP | GO:1901607 | alpha-amino acid biosynthetic process | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |