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  5. GSVIVT01026849001

GSVIVT01026849001


Description : RNA biosynthesis.transcriptional activation.LIM transcription factor


Gene families : OG0000440 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000440_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01026849001
Cluster HCCA: Cluster_357

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00259550 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.LIM... 0.02 OrthoFinder output from all 47 species
AT2G39900 No alias GATA type zinc finger transcription factor family protein 0.03 OrthoFinder output from all 47 species
Adi_g080585 WLIM1 LIM-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g07526 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g11111 WLIM1 LIM-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Als_g51386 No alias LIM-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g12127 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g18839 No alias LIM-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g06316 WLIM1 LIM-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Dac_g28430 WLIM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g39322 WLIM1 LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g04716 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03324 No alias LIM-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01007812001 WLIM1 RNA biosynthesis.transcriptional activation.LIM... 0.01 OrthoFinder output from all 47 species
Gb_09450 No alias transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
Gb_11447 WLIM1 transcription factor (LIM) 0.01 OrthoFinder output from all 47 species
LOC_Os02g42820.1 LOC_Os02g42820 transcription factor (LIM) 0.01 OrthoFinder output from all 47 species
LOC_Os04g45010.1 LOC_Os04g45010 transcription factor (LIM) 0.01 OrthoFinder output from all 47 species
LOC_Os10g35930.1 LOC_Os10g35930 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
Lfl_g21255 WLIM1 LIM-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
MA_104604g0010 WLIM1 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
Msp_g05020 No alias LIM-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g08756 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g03350 WLIM1 LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g16712 WLIM1 LIM-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g38135 No alias LIM-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008708 WLIM1 LIM-type transcription factor & original description: CDS=250-810 0.01 OrthoFinder output from all 47 species
Solyc03g114000.3.1 WLIM1, Solyc03g114000 transcription factor (LIM) 0.05 OrthoFinder output from all 47 species
Tin_g04312 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e007423_P001 Zm00001e007423 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
Zm00001e015234_P001 Zm00001e015234 transcription factor (LIM) 0.01 OrthoFinder output from all 47 species
Zm00001e023098_P001 Zm00001e023098 transcription factor (LIM) 0.01 OrthoFinder output from all 47 species
Zm00001e041310_P001 Zm00001e041310 transcription factor (LIM) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
InterPro domains Description Start Stop
IPR001781 Znf_LIM 107 151
IPR001781 Znf_LIM 10 65
No external refs found!