AMTR_s00069p00112860 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00069.76

Description : RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.regulatory subunits.subunit 6


Gene families : OG_01_0003864 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003864_tree ,
OG_02_0004151 (LandPlants) Phylogenetic Tree(s): OG_02_0004151_tree ,
OG_03_0004144 (SeedPlants) Phylogenetic Tree(s): OG_03_0004144_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00069p00112860
Cluster HCCA: Cluster_192

Target Alias Description ECC score Gene Family Method Actions
Cre01.g002200 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.05 Archaeplastida
MA_103708g0010 No alias subunit 6 of RNA polymerase 0.03 Archaeplastida
MA_131181g0010 No alias DNA-directed RNA polymerases II, IV and V subunit 6A... 0.08 Archaeplastida
Pp3c16_17050V3.1 No alias RNA polymerase Rpb6 0.01 Archaeplastida
Solyc09g010500.3.1 No alias subunit 6 of RNA polymerase 0.04 Archaeplastida
Zm00001e004907_P001 No alias subunit 6 of RNA polymerase 0.05 Archaeplastida
Zm00001e012477_P001 No alias subunit 6 of RNA polymerase 0.05 Archaeplastida
MA_103708g0010 No alias subunit 6 of RNA polymerase 0.02 LandPlants
MA_131181g0010 No alias DNA-directed RNA polymerases II, IV and V subunit 6A... 0.06 LandPlants
Pp3c16_17050V3.1 No alias RNA polymerase Rpb6 0.01 LandPlants
Solyc09g010500.3.1 No alias subunit 6 of RNA polymerase 0.03 LandPlants
Zm00001e004907_P001 No alias subunit 6 of RNA polymerase 0.04 LandPlants
Zm00001e012477_P001 No alias subunit 6 of RNA polymerase 0.02 LandPlants
GSVIVT01010613001 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.01 SeedPlants
Solyc09g010500.3.1 No alias subunit 6 of RNA polymerase 0.03 SeedPlants
Zm00001e012477_P001 No alias subunit 6 of RNA polymerase 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR006110 Pol_omega/K/RPB6 59 114
No external refs found!