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  5. GSVIVT01026271001

GSVIVT01026271001


Description : Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus


Gene families : OG0002525 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002525_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01026271001
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00198080 evm_27.TU.AmTr_v1... External stimuli response.biotic... 0.05 OrthoFinder output from all 47 species
AMTR_s00041p00198410 PUB26,... Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus japonicus 0.03 OrthoFinder output from all 47 species
AMTR_s00041p00198510 evm_27.TU.AmTr_v1... Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus 0.04 OrthoFinder output from all 47 species
Aev_g19831 PUB26 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g12473 No alias ubiquitin E3 ligase *(CERBERUS/LIN) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23565 No alias ubiquitin E3 ligase *(CERBERUS/LIN) & original description: none 0.02 OrthoFinder output from all 47 species
MA_1171557g0010 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.03 OrthoFinder output from all 47 species
MA_15009g0010 PUB26 Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus... 0.03 OrthoFinder output from all 47 species
MA_87817g0010 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.03 OrthoFinder output from all 47 species
Ore_g40012 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g19454 No alias ubiquitin E3 ligase *(CERBERUS/LIN) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g41495 No alias ubiquitin E3 ligase *(CERBERUS/LIN) & original description: none 0.05 OrthoFinder output from all 47 species
Solyc01g066740.3.1 Solyc01g066740 Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.05 OrthoFinder output from all 47 species
Solyc02g069290.3.1 Solyc02g069290 Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.03 OrthoFinder output from all 47 species
Zm00001e031427_P002 Zm00001e031427 Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!