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  5. GSVIVT01026137001

GSVIVT01026137001 (FSD3)


Aliases : FSD3

Description : RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP4/FSD3 component


Gene families : OG0002805 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002805_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01026137001
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00128010 FSD2,... RNA biosynthesis.organelle machineries.RNA polymerase... 0.04 OrthoFinder output from all 47 species
AMTR_s00044p00032580 FSD3,... RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 OrthoFinder output from all 47 species
AT5G23310 FSD3 Fe superoxide dismutase 3 0.07 OrthoFinder output from all 47 species
AT5G51100 FSD2 Fe superoxide dismutase 2 0.1 OrthoFinder output from all 47 species
Ala_g21369 ATFSD1, FSD1 iron superoxide dismutase *(FSD) & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021350.38 ATFSD1, FSD1 Redox homeostasis.enzymatic reactive oxygen species... 0.02 OrthoFinder output from all 47 species
Ehy_g05303 ATFSD1, FSD1 iron superoxide dismutase *(FSD) & original description: none 0.04 OrthoFinder output from all 47 species
Gb_28365 FSD3 iron superoxide dismutase. PAP4/FSD3 cofactor of... 0.08 OrthoFinder output from all 47 species
LOC_Os06g05110.1 FSD3, LOC_Os06g05110 iron superoxide dismutase. PAP4/FSD3 cofactor of... 0.05 OrthoFinder output from all 47 species
Mp7g14090.1 ATFSD1, FSD1 iron superoxide dismutase 0.09 OrthoFinder output from all 47 species
Pir_g04876 FSD2 cofactor of plastid-encoded RNA polymerase *(PAP9/FSD2)... 0.04 OrthoFinder output from all 47 species
Ppi_g11986 FSD2 iron superoxide dismutase *(FSD) & original description: none 0.03 OrthoFinder output from all 47 species
Smo91586 ATFSD1, FSD1 Redox homeostasis.enzymatic reactive oxygen species... 0.03 OrthoFinder output from all 47 species
Solyc02g021140.3.1 FSD3, Solyc02g021140 iron superoxide dismutase. PAP4/FSD3 cofactor of... 0.05 OrthoFinder output from all 47 species
Solyc03g095180.3.1 FSD2, Solyc03g095180 iron superoxide dismutase. PAP9/FSD2 cofactor of... 0.07 OrthoFinder output from all 47 species
Tin_g20017 ATFSD1, FSD1 iron superoxide dismutase *(FSD) & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e029984_P001 FSD3, Zm00001e029984 iron superoxide dismutase. PAP4/FSD3 cofactor of... 0.04 OrthoFinder output from all 47 species
Zm00001e036663_P001 FSD2, Zm00001e036663 iron superoxide dismutase 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004784 superoxide dismutase activity IEA Interproscan
BP GO:0006801 superoxide metabolic process IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004418 hydroxymethylbilane synthase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006952 defense response IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR019831 Mn/Fe_SOD_N 108 193
IPR019832 Mn/Fe_SOD_C 203 303
No external refs found!