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  5. GSVIVT01025547001

GSVIVT01025547001


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL4 component


Gene families : OG0002398 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002398_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01025547001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00210590 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 OrthoFinder output from all 47 species
AT3G09630 No alias Ribosomal protein L4/L1 family 0.12 OrthoFinder output from all 47 species
AT5G02870 No alias Ribosomal protein L4/L1 family 0.13 OrthoFinder output from all 47 species
Adi_g098159 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ala_g04140 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Als_g12096 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Als_g19062 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g12528 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Aspi01Gene66463.t1 Aspi01Gene66463 component *(uL4) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.07G041200.1 Ceric.07G041200 component *(uL4) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Ceric.18G033500.1 Ceric.18G033500 component *(uL4) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Cpa|evm.model.tig00022075.53 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 OrthoFinder output from all 47 species
Cre09.g397697 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 OrthoFinder output from all 47 species
Dac_g17142 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Dcu_g06226 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Dcu_g25869 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
LOC_Os03g58204.1 LOC_Os03g58204 component RPL4 of LSU proteome component 0.13 OrthoFinder output from all 47 species
LOC_Os07g08330.1 LOC_Os07g08330 component RPL4 of LSU proteome component 0.1 OrthoFinder output from all 47 species
Len_g18811 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Len_g22033 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g29160 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
MA_9991417g0010 No alias component RPL4 of LSU proteome component 0.07 OrthoFinder output from all 47 species
Mp4g20310.1 No alias component RPL4 of LSU proteome component 0.11 OrthoFinder output from all 47 species
Msp_g01521 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Nbi_g16964 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Pp3c23_9380V3.1 Pp3c23_9380 Ribosomal protein L4/L1 family 0.01 OrthoFinder output from all 47 species
Sam_g13131 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g13132 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g25486 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Solyc09g007250.4.1 Solyc09g007250 component RPL4 of LSU proteome component 0.14 OrthoFinder output from all 47 species
Solyc10g084350.2.1 Solyc10g084350 component RPL4 of LSU proteome component 0.13 OrthoFinder output from all 47 species
Solyc10g086010.2.1 Solyc10g086010 component RPL4 of LSU proteome component 0.1 OrthoFinder output from all 47 species
Spa_g04220 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Spa_g43372 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Tin_g14297 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Zm00001e005988_P001 Zm00001e005988 component RPL4 of LSU proteome component 0.1 OrthoFinder output from all 47 species
Zm00001e011456_P002 Zm00001e011456 component RPL4 of LSU proteome component 0.08 OrthoFinder output from all 47 species
Zm00001e011869_P001 Zm00001e011869 component RPL4 of LSU proteome component 0.1 OrthoFinder output from all 47 species
Zm00001e032938_P001 Zm00001e032938 component RPL4 of LSU proteome component 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0016485 protein processing IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
InterPro domains Description Start Stop
IPR025755 Ribos_L4_C_dom 220 292
IPR002136 Ribosomal_L4/L1e 27 124
IPR002136 Ribosomal_L4/L1e 146 205
No external refs found!