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  5. GSVIVT01025536001

GSVIVT01025536001 (CRM3, HCF152)


Aliases : CRM3, HCF152

Description : RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.HCF152 transcript stability factor


Gene families : OG0001501 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001501_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01025536001
Cluster HCCA: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
Ala_g09008 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.02 OrthoFinder output from all 47 species
Ehy_g23058 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.07 OrthoFinder output from all 47 species
Gb_11553 CRM3, HCF152 HCF152 plastidial RNA transcript stability factor 0.04 OrthoFinder output from all 47 species
Nbi_g15156 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.05 OrthoFinder output from all 47 species
Sam_g12051 No alias plastidial transcript stability factor *(HCF152) &... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 363 388
IPR002885 Pentatricopeptide_repeat 506 533
IPR002885 Pentatricopeptide_repeat 540 585
IPR002885 Pentatricopeptide_repeat 433 480
IPR002885 Pentatricopeptide_repeat 238 286
IPR002885 Pentatricopeptide_repeat 396 426
No external refs found!