GSVIVT01025500001

No description available

Gene families : OG0009266 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0009266_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01025500001
Cluster	HCCA: Cluster_51

Target	Alias	Description	ECC score	Gene Family Method
AT4G26370	No alias	antitermination NusB domain-containing protein	0.11	OrthoFinder output from all 47 species
Ala_g08797	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Als_g10527	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0027.g023634	No alias	not classified & original description: CDS=91-1023	0.07	OrthoFinder output from all 47 species
Dde_g40720	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Gb_23197	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
LOC_Os03g45400.1	LOC_Os03g45400	no hits & (original description: none)	0.11	OrthoFinder output from all 47 species
Ore_g26810	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g14775	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0127.g021800	No alias	not classified & original description: CDS=127-1062	0.04	OrthoFinder output from all 47 species
Sam_g12537	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Solyc01g028870.3.1	Solyc01g028870	no hits & (original description: none)	0.06	OrthoFinder output from all 47 species
Zm00001e005221_P003	Zm00001e005221	no hits & (original description: none)	0.06	OrthoFinder output from all 47 species
Zm00001e012360_P002	Zm00001e012360	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004645	1,4-alpha-oligoglucan phosphorylase activity	IEP	HCCA
MF	GO:0004807	triose-phosphate isomerase activity	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
MF	GO:0008184	glycogen phosphorylase activity	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0016860	intramolecular oxidoreductase activity	IEP	HCCA
MF	GO:0016861	intramolecular oxidoreductase activity, interconverting aldoses and ketoses	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
CC	GO:0019898	extrinsic component of membrane	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006027	NusB_RsmB_TIM44	113	199

External Links

No external refs found!

GSVIVT01025500001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation