GSVIVT01025059001

Description : RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT2 component

Gene families : OG0002132 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002132_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01025059001
Cluster	HCCA: Cluster_109

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00016p00180540	evm_27.TU.AmTr_v1...	RNA processing.RNA decay.deadenylation-dependent...	0.03	OrthoFinder output from all 47 species
Adi_g057085	No alias	component *(NOT2) of mRNA deadenylation CCR4-NOT complex...	0.02	OrthoFinder output from all 47 species
Adi_g057086	No alias	component *(NOT2) of mRNA deadenylation CCR4-NOT complex...	0.02	OrthoFinder output from all 47 species
Ala_g12726	No alias	component *(NOT2) of mRNA deadenylation CCR4-NOT complex...	0.04	OrthoFinder output from all 47 species
Aop_g13368	No alias	component *(NOT2) of mRNA deadenylation CCR4-NOT complex...	0.02	OrthoFinder output from all 47 species
Ceric.1Z074000.1	Ceric.1Z074000	component *(NOT2) of mRNA deadenylation CCR4-NOT complex...	0.04	OrthoFinder output from all 47 species
Dcu_g06443	No alias	component *(NOT2) of mRNA deadenylation CCR4-NOT complex...	0.03	OrthoFinder output from all 47 species
Len_g13705	No alias	component *(NOT2) of mRNA deadenylation CCR4-NOT complex...	0.02	OrthoFinder output from all 47 species
Mp1g21150.1	No alias	component NOT2 of mRNA deadenylation CCR4-NOT complex	0.04	OrthoFinder output from all 47 species
Pnu_g20979	No alias	component *(NOT2) of mRNA deadenylation CCR4-NOT complex...	0.03	OrthoFinder output from all 47 species
Ppi_g09714	No alias	component *(NOT2) of mRNA deadenylation CCR4-NOT complex...	0.02	OrthoFinder output from all 47 species
Sam_g06699	No alias	component *(NOT2) of mRNA deadenylation CCR4-NOT complex...	0.02	OrthoFinder output from all 47 species
Solyc06g075590.4.1	Solyc06g075590	component NOT2 of mRNA deadenylation CCR4-NOT complex	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0004559	alpha-mannosidase activity	IEP	HCCA
MF	GO:0004571	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
MF	GO:0015923	mannosidase activity	IEP	HCCA
MF	GO:0015924	mannosyl-oligosaccharide mannosidase activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007282	NOT2/3/5_C	497	619

External Links

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GSVIVT01025059001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation