GSVIVT01025040001 (PGP20)

Aliases : PGP20

Description : Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCB transporter

Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01025040001

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00018p00193700	ABCB14,...	ABC transporter B family member 14 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
AT3G28860	ABCB19,...	ATP binding cassette subfamily B19	0.03	OrthoFinder output from all 47 species
AT3G55320	PGP20	P-glycoprotein 20	0.05	OrthoFinder output from all 47 species
Ala_g26174	No alias	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene15961.t1	ABCB19,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene46501.t1	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene62048.t2	PGP2, Aspi01Gene62048	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0002.g001271	ABCB19,...	subfamily ABCB transporter & original description: CDS=82-3879	0.03	OrthoFinder output from all 47 species
Ceric.10G028600.1	PGP20, Ceric.10G028600	subfamily ABCB transporter & original description:...	0.02	OrthoFinder output from all 47 species
Dcu_g08924	PGP20	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g12010	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Gb_20009	PGP6	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
LOC_Os01g74470.1	PGP20, LOC_Os01g74470	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
LOC_Os04g54930.1	ABCB19,...	subfamily ABCB transporter	0.06	OrthoFinder output from all 47 species
Msp_g32270	No alias	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006153	PGP11	subfamily ABCB transporter & original description: CDS=261-4235	0.03	OrthoFinder output from all 47 species
Sam_g25355	No alias	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Smo139408	PGP20	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005515	protein binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011527	ABC1_TM_dom	82	355
IPR011527	ABC1_TM_dom	840	1096
IPR003439	ABC_transporter-like_ATP-bd	426	571

External Links

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GSVIVT01025040001 (PGP20)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation