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  5. GSVIVT01024716001

GSVIVT01024716001


Description : RNA biosynthesis.transcriptional activation.PHD finger transcription factor


Gene families : OG0000402 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000402_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01024716001
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
Adi_g055727 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene40700.t1 Aspi01Gene40700 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene42672.t1 Aspi01Gene42672 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0009.g011903 No alias not classified & original description: CDS=1-1110 0.03 OrthoFinder output from all 47 species
Azfi_s0049.g030786 No alias not classified & original description: CDS=1-5421 0.03 OrthoFinder output from all 47 species
GSVIVT01026454001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.05 OrthoFinder output from all 47 species
Mp6g21030.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g42576 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g31270 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003446 No alias not classified & original description: CDS=1-1437 0.04 OrthoFinder output from all 47 species
Sam_g10530 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc08g078120.2.1 Solyc08g078120 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e001315_P001 Zm00001e001315 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0003756 protein disulfide isomerase activity IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0009116 nucleoside metabolic process IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016864 intramolecular oxidoreductase activity, transposing S-S bonds IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR032308 TDBD 238 310
IPR019787 Znf_PHD-finger 353 394
No external refs found!