GSVIVT01024604001

Description : RNA processing.RNA modification.pseudouridylation.TruA-type tRNA pseudouridine synthase

Gene families : OG0007505 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007505_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01024604001
Cluster	HCCA: Cluster_51

Target	Alias	Description	ECC score	Gene Family Method
Azfi_s0257.g060592	No alias	EC_5.4 intramolecular transferase & original...	0.03	OrthoFinder output from all 47 species
Cre03.g152950	No alias	RNA processing.RNA...	0.03	OrthoFinder output from all 47 species
Cre16.g691900	No alias	RNA processing.RNA...	0.04	OrthoFinder output from all 47 species
Dcu_g18723	No alias	EC_5.4 intramolecular transferase & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g16734	No alias	EC_5.4 intramolecular transferase & original description: none	0.04	OrthoFinder output from all 47 species
LOC_Os03g21980.1	LOC_Os03g21980	tRNA pseudouridine synthase (TruA)	0.07	OrthoFinder output from all 47 species
MA_10432235g0020	No alias	tRNA pseudouridine synthase (TruA)	0.03	OrthoFinder output from all 47 species
Ppi_g12272	No alias	EC_5.4 intramolecular transferase & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e001596_P001	Zm00001e001596	tRNA pseudouridine synthase (TruA)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	IEA	Interproscan
MF	GO:0009982	pseudouridine synthase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016866	intramolecular transferase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0006396	RNA processing	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	HCCA
MF	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	IEP	HCCA
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	HCCA
MF	GO:0071949	FAD binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR020097	PsdUridine_synth_TruA_a/b_dom	224	398

External Links

No external refs found!