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  5. GSVIVT01024495001

GSVIVT01024495001


Description : Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0000613 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000613_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01024495001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00095p00027730 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g80270,... 0.03 OrthoFinder output from all 47 species
AMTR_s00135p00094440 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g09450,... 0.03 OrthoFinder output from all 47 species
Dcu_g08858 No alias RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g14866 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_03508 No alias Pentatricopeptide repeat-containing protein At4g02820,... 0.03 OrthoFinder output from all 47 species
Gb_14211 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 OrthoFinder output from all 47 species
Gb_38114 No alias RNA editing factor (POCO) 0.03 OrthoFinder output from all 47 species
LOC_Os01g19490.1 LOC_Os01g19490 Pentatricopeptide repeat-containing protein At4g01990,... 0.03 OrthoFinder output from all 47 species
LOC_Os07g12140.1 LOC_Os07g12140 RNA editing factor (POCO) 0.05 OrthoFinder output from all 47 species
LOC_Os07g40750.1 LOC_Os07g40750 Pentatricopeptide repeat-containing protein At4g21705,... 0.05 OrthoFinder output from all 47 species
MA_492314g0010 No alias RNA editing factor (POCO) 0.05 OrthoFinder output from all 47 species
MA_7558g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.04 OrthoFinder output from all 47 species
MA_77400g0010 No alias Pentatricopeptide repeat-containing protein At1g15480,... 0.03 OrthoFinder output from all 47 species
Solyc11g006380.2.1 Solyc11g006380 Pentatricopeptide repeat-containing protein At1g60770... 0.03 OrthoFinder output from all 47 species
Zm00001e012594_P001 Zm00001e012594 Pentatricopeptide repeat-containing protein At4g21705,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009890 negative regulation of biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0031324 negative regulation of cellular metabolic process IEP HCCA
BP GO:0031327 negative regulation of cellular biosynthetic process IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0045892 negative regulation of DNA-templated transcription IEP HCCA
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051253 negative regulation of RNA metabolic process IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1902679 negative regulation of RNA biosynthetic process IEP HCCA
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 220 271
IPR002885 Pentatricopeptide_repeat 370 397
IPR002885 Pentatricopeptide_repeat 159 188
IPR002885 Pentatricopeptide_repeat 334 356
No external refs found!