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  5. GSVIVT01024181001

GSVIVT01024181001


Description : Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis thaliana


Gene families : OG0001217 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001217_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01024181001
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00027p00244500 evm_27.TU.AmTr_v1... Zinc finger CCCH domain-containing protein 19... 0.06 OrthoFinder output from all 47 species
AT2G16485 No alias nucleic acid binding;zinc ion binding;DNA binding 0.06 OrthoFinder output from all 47 species
AT3G51120 No alias DNA binding;zinc ion binding;nucleic acid... 0.05 OrthoFinder output from all 47 species
Adi_g007808 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.02 OrthoFinder output from all 47 species
Adi_g026023 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g077164 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g06673 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.02 OrthoFinder output from all 47 species
Ala_g35223 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g03906 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Aob_g19106 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.02 OrthoFinder output from all 47 species
Aop_g13646 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene03548.t1 Aspi01Gene03548 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g74669 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.04 OrthoFinder output from all 47 species
Ceric.09G099900.1 Ceric.09G099900 protein factor (NERD) of non-canonical RdDM pathway &... 0.09 OrthoFinder output from all 47 species
Dcu_g02022 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.09 OrthoFinder output from all 47 species
Ehy_g05103 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Ehy_g26663 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_13135 No alias Zinc finger CCCH domain-containing protein 19... 0.03 OrthoFinder output from all 47 species
LOC_Os09g36090.1 LOC_Os09g36090 protein factor (NERD) of non-canonical RdDM pathway 0.05 OrthoFinder output from all 47 species
LOC_Os10g36810.1 LOC_Os10g36810 protein factor (NERD) of non-canonical RdDM pathway 0.04 OrthoFinder output from all 47 species
Len_g13930 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.05 OrthoFinder output from all 47 species
Lfl_g05726 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Lfl_g06273 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.04 OrthoFinder output from all 47 species
Lfl_g35904 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_116694g0010 No alias Zinc finger CCCH domain-containing protein 19... 0.05 OrthoFinder output from all 47 species
Mp4g08690.1 No alias protein factor (NERD) of non-canonical RdDM pathway 0.04 OrthoFinder output from all 47 species
Msp_g38424 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.04 OrthoFinder output from all 47 species
Nbi_g14762 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.04 OrthoFinder output from all 47 species
Nbi_g34438 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Ore_g10283 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g16785 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.05 OrthoFinder output from all 47 species
Ore_g45456 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g06499 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Pir_g12625 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.04 OrthoFinder output from all 47 species
Ppi_g49417 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.02 OrthoFinder output from all 47 species
Ppi_g58382 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.02 OrthoFinder output from all 47 species
Sam_g52359 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.07 OrthoFinder output from all 47 species
Solyc03g033630.3.1 Solyc03g033630 Zinc finger CCCH domain-containing protein 44... 0.09 OrthoFinder output from all 47 species
Solyc11g062220.2.1 Solyc11g062220 Zinc finger CCCH domain-containing protein 19... 0.07 OrthoFinder output from all 47 species
Spa_g30973 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.04 OrthoFinder output from all 47 species
Tin_g09943 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.07 OrthoFinder output from all 47 species
Tin_g43997 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Zm00001e000091_P002 Zm00001e000091 protein factor (NERD) of non-canonical RdDM pathway 0.1 OrthoFinder output from all 47 species
Zm00001e012555_P003 Zm00001e012555 protein factor (NERD) of non-canonical RdDM pathway 0.03 OrthoFinder output from all 47 species
Zm00001e019791_P001 Zm00001e019791 protein factor (NERD) of non-canonical RdDM pathway 0.05 OrthoFinder output from all 47 species
Zm00001e029059_P002 Zm00001e029059 protein factor (NERD) of non-canonical RdDM pathway 0.07 OrthoFinder output from all 47 species
Zm00001e039077_P001 Zm00001e039077 protein factor (NERD) of non-canonical RdDM pathway 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR003121 SWIB_MDM2_domain 346 419
IPR003169 GYF 810 850
IPR004343 Plus-3_dom 485 588
No external refs found!