GSVIVT01023818001 (CRR28)


Aliases : CRR28

Description : Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01023818001

Target Alias Description ECC score Gene Family Method Actions
AT1G08070 OTP82 Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 OrthoFinder output from all 47 species
AT5G39350 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 OrthoFinder output from all 47 species
Adi_g005698 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g057344 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g069207 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g074694 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g42060 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g46730 CRR2 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g06301 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30489 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g31748 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g33107 DOT4 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g39960 No alias ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Als_g62404 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g07366 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g17417 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27221 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g29683 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g37921 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene02406.t1 Aspi01Gene02406 ssDNA-binding protein *(OSB) & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene14575.t2 CRR22, Aspi01Gene14575 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene18986.t1 MEF21, Aspi01Gene18986 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene21897.t1 EMB2758, Aspi01Gene21897 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene25448.t1 Aspi01Gene25448 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene33231.t1 CRR22, Aspi01Gene33231 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene34811.t1 Aspi01Gene34811 ssDNA-binding protein *(OSB) & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene37396.t1 Aspi01Gene37396 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene45795.t1 Aspi01Gene45795 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene70770.t1 Aspi01Gene70770 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dac_g05872 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g15109 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g15344 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g22189 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dac_g23318 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g25263 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g25286 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g28137 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g43258 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g44492 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g44606 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g46003 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g04930 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g14112 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dde_g36369 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g04288 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g32688 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g16581 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g33302 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g14913 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g35200 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g45892 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g19383 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g40766 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g03424 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12402 SLO1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g16163 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g19353 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05733 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g09492 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g18431 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g35259 RARE1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g35387 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g53969 OTP84 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011528 EMB2758 non-specific cation channel *(PQL1) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0060.g015239 No alias not classified & original description: CDS=1-2529 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0243.g026662 No alias not classified & original description: CDS=264-2522 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0321.g027231 No alias substrate adaptor of SCF E3 ubiquitin ligase complex &... 0.02 OrthoFinder output from all 47 species
Smo98955 CRR22 Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
Solyc12g096680.1.1 REME1, Solyc12g096680 Pentatricopeptide repeat-containing protein At2g03880,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR032867 DYW_dom 437 560
IPR002885 Pentatricopeptide_repeat 161 208
IPR002885 Pentatricopeptide_repeat 261 308
IPR002885 Pentatricopeptide_repeat 337 360
No external refs found!