GSVIVT01023325001 (ATRECQ4A, ATSGS1, RECQ4A)

Aliases : ATRECQ4A, ATSGS1, RECQ4A

Description : Cell cycle.mitosis and meiosis.meiotic recombination.meiotic crossover.RTR Holliday junction dissolution complex.RecQ4A helicase component

Gene families : OG0000844 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000844_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01023325001
Cluster	HCCA: Cluster_109

Target	Alias	Description	ECC score	Gene Family Method
Azfi_s0087.g042358	ATRECQ4A, ATSGS1, RECQ4A	helicase component *(RecQ4A) of RTR Holliday junction...	0.06	OrthoFinder output from all 47 species
Ceric.17G060200.1	ATRECQ4A,...	helicase component *(RecQ4A) of RTR Holliday junction...	0.1	OrthoFinder output from all 47 species
Ceric.34G005600.1	RECQI1, Ceric.34G005600	not classified & original description: pacid=50623064...	0.1	OrthoFinder output from all 47 species
Gb_08699	RECQI1	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis...	0.08	OrthoFinder output from all 47 species
Gb_33079	ATRECQ4A, ATSGS1, RECQ4A	helicase component RecQ4A of RTR Holliday junction...	0.04	OrthoFinder output from all 47 species
LOC_Os04g35420.1	ATRECQ4A,...	helicase component RecQ4A of RTR Holliday junction...	0.03	OrthoFinder output from all 47 species
Len_g14718	ATRECQ4A, ATSGS1, RECQ4A	helicase component *(RecQ4A) of RTR Holliday junction...	0.03	OrthoFinder output from all 47 species
MA_10435954g0010	RECQI1	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_10436537g0010	ATRECQ4A, ATSGS1, RECQ4A	helicase component RecQ4A of RTR Holliday junction...	0.04	OrthoFinder output from all 47 species
MA_30494g0010	RECQI1	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Mp4g14290.1	ATRECQ4A, ATSGS1, RECQ4A	helicase component RecQ4A of RTR Holliday junction...	0.08	OrthoFinder output from all 47 species
Msp_g27927	RECQI1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Smo41328	RecQl3, ATRECQ3	ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Solyc01g100280.4.1	RECQI1, Solyc01g100280	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis...	0.08	OrthoFinder output from all 47 species
Solyc01g103960.3.1	ATRECQ4A,...	helicase component RecQ4A of RTR Holliday junction...	0.04	OrthoFinder output from all 47 species
Tin_g29220	ATRECQ4A, ATSGS1, RECQ4A	helicase component *(RecQ4A) of RTR Holliday junction...	0.02	OrthoFinder output from all 47 species
Zm00001e016051_P001	RecQl3, ATRECQ3,...	ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	HCCA
CC	GO:0000152	nuclear ubiquitin ligase complex	IEP	HCCA
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0003909	DNA ligase activity	IEP	HCCA
MF	GO:0003910	DNA ligase (ATP) activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005680	anaphase-promoting complex	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	HCCA
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0051726	regulation of cell cycle	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	441	607
IPR001650	Helicase_C	645	750
IPR002121	HRDC_dom	1009	1076
IPR032284	RecQ_Zn-bd	762	844
IPR018982	RQC_domain	851	967

External Links

No external refs found!

GSVIVT01023325001 (ATRECQ4A, ATSGS1, RECQ4A)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation