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  5. GSVIVT01023283001

GSVIVT01023283001


Description : RNA biosynthesis.transcriptional activation.TCP transcription factor


Gene families : OG0000443 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000443_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01023283001
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00227430 AT-TCP20, TCP20,... Multi-process regulation.circadian clock.morning element... 0.03 OrthoFinder output from all 47 species
AT1G69690 No alias TCP family transcription factor 0.04 OrthoFinder output from all 47 species
AT3G45150 TCP16 TCP domain protein 16 0.04 OrthoFinder output from all 47 species
AT5G08330 No alias TCP family transcription factor 0.04 OrthoFinder output from all 47 species
AT5G23280 No alias TCP family transcription factor 0.04 OrthoFinder output from all 47 species
Adi_g060147 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g069116 AtTCP14, TCP14 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g086308 No alias TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g088074 No alias TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g06733 No alias TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g22689 No alias TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g03271 AT-TCP20, TCP20,... TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene43392.t1 Aspi01Gene43392 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene56690.t1 Aspi01Gene56690 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene72040.t1 AT-TCP20, TCP20,... TCP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0006.g010337 AtTCP14, TCP14 TCP-type transcription factor & original description: CDS=1-2394 0.05 OrthoFinder output from all 47 species
Azfi_s0090.g042743 AtTCP14, TCP14 TCP-type transcription factor & original description: CDS=1-1476 0.03 OrthoFinder output from all 47 species
Dde_g01691 No alias TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Gb_34229 AtTCP14, TCP14 transcription factor (TCP) 0.04 OrthoFinder output from all 47 species
LOC_Os02g51280.1 LOC_Os02g51280 transcription factor (TCP) 0.06 OrthoFinder output from all 47 species
LOC_Os08g43160.1 LOC_Os08g43160 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
LOC_Os12g07480.1 LOC_Os12g07480 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Lfl_g07877 No alias TCP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g15294 No alias TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g32671 No alias TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_16752g0010 No alias transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
MA_635g0010 AtTCP14, TCP14 transcription factor (TCP) 0.05 OrthoFinder output from all 47 species
MA_96244g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp7g09490.1 No alias transcription factor (TCP) 0.04 OrthoFinder output from all 47 species
Nbi_g05851 No alias TCP-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g25570 No alias TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40661 No alias circadian clock activation factor *(TCP20) & original... 0.04 OrthoFinder output from all 47 species
Pnu_g02433 AtTCP14, TCP14 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g06948 AT-TCP20, TCP20,... circadian clock activation factor *(TCP20) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017047 No alias TCP-type transcription factor & original description: CDS=1-1221 0.02 OrthoFinder output from all 47 species
Smo441321 No alias RNA biosynthesis.transcriptional activation.TCP... 0.05 OrthoFinder output from all 47 species
Solyc01g103780.4.1 Solyc01g103780 transcription factor (TCP) 0.04 OrthoFinder output from all 47 species
Solyc03g006800.1.1 Solyc03g006800 transcription factor (TCP) 0.06 OrthoFinder output from all 47 species
Solyc05g007420.2.1 Solyc05g007420 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Solyc08g080150.1.1 Solyc08g080150 transcription factor (TCP) 0.04 OrthoFinder output from all 47 species
Spa_g17288 AtTCP14, TCP14 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e015209_P001 Zm00001e015209 transcription factor (TCP). CHE circadian clock repression factor 0.03 OrthoFinder output from all 47 species
Zm00001e023897_P001 Zm00001e023897 transcription factor (TCP) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR017887 TF_TCP_subgr 113 233
No external refs found!