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  5. GSVIVT01022190001

GSVIVT01022190001


Description : RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.ACINUS component


Gene families : OG0001433 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001433_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01022190001

Target Alias Description ECC score Gene Family Method Actions
Adi_g017411 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Als_g27768 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.05 OrthoFinder output from all 47 species
Als_g39202 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g14212 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Aspi01Gene69547.t1 Aspi01Gene69547 component *(ACINUS) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Cba_g39106 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Ceric.13G077200.1 Ceric.13G077200 component *(ACINUS) of RNA quality control Exon Junction... 0.07 OrthoFinder output from all 47 species
Dcu_g09840 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Dcu_g39092 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Dcu_g42746 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os03g26630.1 LOC_Os03g26630 component ACINUS of RNA quality control Exon Junction complex 0.04 OrthoFinder output from all 47 species
Mp2g15000.1 No alias component ACINUS of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Nbi_g09348 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Ore_g30531 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Pir_g08467 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Ppi_g08232 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0041.g012620 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Sam_g04087 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Sam_g37080 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Solyc04g072670.4.1 Solyc04g072670 component ACINUS of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
Tin_g05227 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Zm00001e037964_P002 Zm00001e037964 component ACINUS of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003713 transcription coactivator activity IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR032552 RSB_motif 369 411
No external refs found!