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  5. GSVIVT01021881001

GSVIVT01021881001


Description : Late embryogenesis abundant protein D-34 OS=Gossypium hirsutum


Gene families : OG0003000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003000_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01021881001
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
AT3G22490 No alias Seed maturation protein 0.22 OrthoFinder output from all 47 species
AT3G22500 ATECP31 Seed maturation protein 0.22 OrthoFinder output from all 47 species
Azfi_s0008.g011458 No alias not classified & original description: CDS=379-1194 0.06 OrthoFinder output from all 47 species
Ceric.07G017000.1 Ceric.07G017000 not classified & original description: pacid=50628070... 0.06 OrthoFinder output from all 47 species
Ceric.11G015400.1 Ceric.11G015400 not classified & original description: pacid=50596852... 0.06 OrthoFinder output from all 47 species
Ceric.12G023800.1 RAB28, ATRAB28,... not classified & original description: pacid=50600510... 0.06 OrthoFinder output from all 47 species
Ceric.32G026700.1 Ceric.32G026700 not classified & original description: pacid=50598394... 0.05 OrthoFinder output from all 47 species
Dde_g09016 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os03g06360.1 LOC_Os03g06360 Late embryogenesis abundant protein D-34 OS=Gossypium... 0.17 OrthoFinder output from all 47 species
LOC_Os03g53610.1 LOC_Os03g53610 Late embryogenesis abundant protein D-34 OS=Gossypium... 0.11 OrthoFinder output from all 47 species
LOC_Os03g53620.1 ATECP31, LOC_Os03g53620 no hits & (original description: none) 0.18 OrthoFinder output from all 47 species
LOC_Os06g23350.1 LOC_Os06g23350 Late embryogenesis abundant protein D-34 OS=Gossypium... 0.16 OrthoFinder output from all 47 species
LOC_Os10g29570.1 RAB28, ATRAB28,... no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
Len_g28025 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g40603 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_14118g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_216273g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_326206g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_49897g0020 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Mp5g18240.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp7g06630.1 No alias Late embryogenesis abundant protein 31 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Nbi_g25972 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c6_200V3.1 Pp3c6_200 Seed maturation protein 0.03 OrthoFinder output from all 47 species
Ppi_g09444 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g55933 RAB28, ATRAB28 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56546 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo84789 No alias Late embryogenesis abundant protein 31 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc09g065360.4.1 Solyc09g065360 Late embryogenesis abundant protein 31 OS=Arabidopsis... 0.21 OrthoFinder output from all 47 species
Solyc09g082100.3.1 Solyc09g082100 Late embryogenesis abundant protein 31 OS=Arabidopsis... 0.23 OrthoFinder output from all 47 species
Solyc09g082110.4.1 Solyc09g082110 Late embryogenesis abundant protein D-34 OS=Gossypium... 0.21 OrthoFinder output from all 47 species
Zm00001e000449_P001 Zm00001e000449 Late embryogenesis abundant protein D-34 OS=Gossypium... 0.1 OrthoFinder output from all 47 species
Zm00001e005665_P002 Zm00001e005665 Late embryogenesis abundant protein D-34 OS=Gossypium... 0.12 OrthoFinder output from all 47 species
Zm00001e005666_P001 Zm00001e005666 no hits & (original description: none) 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001101 response to acid chemical IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0009415 response to water IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0010035 response to inorganic substance IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:1901700 response to oxygen-containing compound IEP HCCA
InterPro domains Description Start Stop
IPR007011 LEA_SMP_dom 16 71
IPR007011 LEA_SMP_dom 132 189
IPR007011 LEA_SMP_dom 197 254
No external refs found!