GSVIVT01021728001

Description : Cell cycle.organelle machineries.DNA replication.DNA primase and helicase TWINKLE

Gene families : OG0002154 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002154_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01021728001

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00032p00034370	evm_27.TU.AmTr_v1...	Cell cycle.organelle machineries.DNA replication.DNA...	0.02	OrthoFinder output from all 47 species
Ala_g11567	No alias	DNA primase and helicase *(TWINKLE) & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0003.g007473	No alias	DNA primase and helicase *(TWINKLE) & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01037928001	No alias	Twinkle homolog protein, chloroplastic/mitochondrial...	0.05	OrthoFinder output from all 47 species
LOC_Os06g45980.1	LOC_Os06g45980	DNA primase and helicase (TWINKLE)	0.11	OrthoFinder output from all 47 species
Len_g57700	No alias	DNA primase and helicase *(TWINKLE) & original description: none	0.03	OrthoFinder output from all 47 species
MA_21134g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Msp_g35190	No alias	DNA primase and helicase *(TWINKLE) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g57752	No alias	DNA primase and helicase *(TWINKLE) & original description: none	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007779	No alias	DNA primase and helicase *(TWINKLE) & original...	0.04	OrthoFinder output from all 47 species
Smo164801	No alias	Cell cycle.organelle machineries.DNA replication.DNA...	0.02	OrthoFinder output from all 47 species
Solyc02g022830.3.1	Solyc02g022830	DNA primase and helicase (TWINKLE)	0.03	OrthoFinder output from all 47 species
Spa_g11494	No alias	DNA primase and helicase *(TWINKLE) & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003678	DNA helicase activity	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR006171	TOPRIM_domain	286	377
IPR007694	DNA_helicase_DnaB-like_C	441	684

External Links

No external refs found!

GSVIVT01021728001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation