GSVIVT01021433001

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL18a component

Gene families : OG0001533 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001533_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01021433001
Cluster	HCCA: Cluster_62

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00102800	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
AMTR_s00003p00234980	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.12	OrthoFinder output from all 47 species
AT1G29965	No alias	Ribosomal protein L18ae/LX family protein	0.06	OrthoFinder output from all 47 species
AT2G34480	No alias	Ribosomal protein L18ae/LX family protein	0.25	OrthoFinder output from all 47 species
AT3G14600	No alias	Ribosomal protein L18ae/LX family protein	0.21	OrthoFinder output from all 47 species
Adi_g041918	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Adi_g075826	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Adi_g112458	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Adi_g125831	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ala_g37995	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Als_g19389	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Als_g37886	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Als_g55906	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aob_g37546	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aop_g20768	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Aop_g20873	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Aop_g31464	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Aspi01Gene02658.t1	Aspi01Gene02658	component *(eL20) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0006.g010195	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cba_g69076	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ceric.28G006400.1	Ceric.28G006400	component *(eL20) of large ribosomal-subunit (LSU)...	0.14	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000615.59	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.19	OrthoFinder output from all 47 species
Cre01.g047750	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.26	OrthoFinder output from all 47 species
Dac_g15791	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.14	OrthoFinder output from all 47 species
Dac_g25344	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Dac_g26638	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Dac_g46104	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Dcu_g29737	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Dcu_g42842	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Dde_g07627	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Gb_05341	No alias	component RPL18a of LSU proteome component	0.09	OrthoFinder output from all 47 species
LOC_Os01g47660.1	LOC_Os01g47660	component RPL18a of LSU proteome component	0.2	OrthoFinder output from all 47 species
LOC_Os01g54870.1	LOC_Os01g54870	component RPL18a of LSU proteome component	0.18	OrthoFinder output from all 47 species
LOC_Os05g49030.1	LOC_Os05g49030	component RPL18a of LSU proteome component	0.17	OrthoFinder output from all 47 species
Len_g23359	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Lfl_g30273	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Lfl_g33947	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
MA_12029g0010	No alias	component RPL18a of LSU proteome component	0.14	OrthoFinder output from all 47 species
Mp1g17730.1	No alias	component RPL18a of LSU proteome component	0.14	OrthoFinder output from all 47 species
Msp_g09599	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Msp_g23887	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Nbi_g17476	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Pir_g28896	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g18708	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g27285	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g56033	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000703	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Sam_g14890	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g28083	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Sam_g28696	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Sam_g32152	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.14	OrthoFinder output from all 47 species
Sam_g47831	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Sam_g48102	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Smo227198	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	OrthoFinder output from all 47 species
Solyc02g070640.3.1	Solyc02g070640	component RPL18a of LSU proteome component	0.1	OrthoFinder output from all 47 species
Solyc02g070650.2.1	Solyc02g070650	component RPL18a of LSU proteome component	0.09	OrthoFinder output from all 47 species
Solyc06g065590.4.1	Solyc06g065590	component RPL18a of LSU proteome component	0.12	OrthoFinder output from all 47 species
Solyc08g016180.3.1	Solyc08g016180	component RPL18a of LSU proteome component	0.17	OrthoFinder output from all 47 species
Spa_g43846	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Tin_g15697	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Zm00001e020218_P001	Zm00001e020218	component RPL18a of LSU proteome component	0.15	OrthoFinder output from all 47 species
Zm00001e026540_P001	Zm00001e026540	component RPL18a of LSU proteome component	0.19	OrthoFinder output from all 47 species
Zm00001e028015_P002	Zm00001e028015	component RPL18a of LSU proteome component	0.14	OrthoFinder output from all 47 species
Zm00001e032436_P001	Zm00001e032436	component RPL18a of LSU proteome component	0.2	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
MF	GO:0030515	snoRNA binding	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR023573	Ribosomal_L18a//L18Ae/LX	7	106

External Links

No external refs found!

GSVIVT01021433001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation