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  5. GSVIVT01021316001

GSVIVT01021316001


Description : DNA damage response.DNA repair mechanisms.homologous recombination repair (HR).exonuclease (EXO1)


Gene families : OG0003251 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003251_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01021316001
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00005p00265020 evm_27.TU.AmTr_v1... DNA damage response.DNA repair mechanisms.homologous... 0.15 OrthoFinder output from all 47 species
Azfi_s0009.g011947 No alias not classified & original description: CDS=18-1211 0.1 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000403.40 No alias DNA damage response.DNA repair mechanisms.homologous... 0.03 OrthoFinder output from all 47 species
Dac_g38690 No alias homologous recombination repair exonuclease *(EXO1) &... 0.06 OrthoFinder output from all 47 species
Gb_08129 No alias homologous recombination repair exonuclease (EXO1) 0.01 OrthoFinder output from all 47 species
Gb_14686 No alias homologous recombination repair exonuclease (EXO1) 0.24 OrthoFinder output from all 47 species
LOC_Os01g56940.1 LOC_Os01g56940 homologous recombination repair exonuclease (EXO1) 0.04 OrthoFinder output from all 47 species
MA_10431686g0010 No alias homologous recombination repair exonuclease (EXO1) 0.15 OrthoFinder output from all 47 species
Msp_g36441 No alias homologous recombination repair exonuclease *(EXO1) &... 0.1 OrthoFinder output from all 47 species
Sacu_v1.1_s0056.g014655 No alias homologous recombination repair exonuclease *(EXO1) &... 0.06 OrthoFinder output from all 47 species
Sam_g35172 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Solyc02g071530.2.1 Solyc02g071530 homologous recombination repair exonuclease (EXO1) 0.18 OrthoFinder output from all 47 species
Solyc03g119070.2.1 Solyc03g119070 homologous recombination repair exonuclease (EXO1) 0.14 OrthoFinder output from all 47 species
Spa_g41224 No alias homologous recombination repair exonuclease *(EXO1) &... 0.03 OrthoFinder output from all 47 species
Spa_g51609 No alias homologous recombination repair exonuclease *(EXO1) &... 0.04 OrthoFinder output from all 47 species
Tin_g07816 No alias homologous recombination repair exonuclease *(EXO1) &... 0.03 OrthoFinder output from all 47 species
Tin_g11001 No alias homologous recombination repair exonuclease *(EXO1) &... 0.16 OrthoFinder output from all 47 species
Zm00001e019645_P001 Zm00001e019645 homologous recombination repair exonuclease (EXO1) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
CC GO:0000808 origin recognition complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051301 cell division IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR006086 XPG-I_dom 139 226
IPR006085 XPG_DNA_repair_N 1 98
No external refs found!