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  5. GSVIVT01020601001

GSVIVT01020601001


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.Sof1 assembly factor


Gene families : OG0004632 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004632_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01020601001
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00202190 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
AT4G28450 No alias nucleotide binding;protein binding 0.08 OrthoFinder output from all 47 species
Aop_g11970 No alias SSU processome assembly factor *(SOF1) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000615.67 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Cre07.g318702 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 OrthoFinder output from all 47 species
Dac_g14855 No alias SSU processome assembly factor *(SOF1) & original... 0.03 OrthoFinder output from all 47 species
LOC_Os01g13730.1 LOC_Os01g13730 SSU processome assembly factor (SOF1) 0.04 OrthoFinder output from all 47 species
Mp5g11980.1 No alias SSU processome assembly factor (SOF1) 0.06 OrthoFinder output from all 47 species
Ore_g06842 No alias SSU processome assembly factor *(SOF1) & original... 0.04 OrthoFinder output from all 47 species
Solyc07g053660.3.1 Solyc07g053660 SSU processome assembly factor (SOF1) 0.1 OrthoFinder output from all 47 species
Tin_g10131 No alias SSU processome assembly factor *(SOF1) & original... 0.05 OrthoFinder output from all 47 species
Zm00001e006402_P001 Zm00001e006402 SSU processome assembly factor (SOF1) 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR007287 Sof1 361 447
IPR001680 WD40_repeat 102 137
IPR001680 WD40_repeat 282 316
IPR001680 WD40_repeat 62 95
IPR001680 WD40_repeat 328 360
No external refs found!