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Description : Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana
Gene families : OG0000613 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000613_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00002p00190720 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g02150... | 0.02 | OrthoFinder output from all 47 species | |
| AMTR_s00095p00027730 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g80270,... | 0.02 | OrthoFinder output from all 47 species | |
| AT1G02370 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.05 | OrthoFinder output from all 47 species | |
| AT1G60770 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.05 | OrthoFinder output from all 47 species | |
| AT1G80270 | PPR596 | PENTATRICOPEPTIDE REPEAT 596 | 0.04 | OrthoFinder output from all 47 species | |
| AT3G15590 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT4G01990 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.06 | OrthoFinder output from all 47 species | |
| AT4G02820 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.05 | OrthoFinder output from all 47 species | |
| AT4G21705 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g016255 | No alias | RNA editing factor *(POCO) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g30824 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g33654 | No alias | RNA editing factor *(POCO) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene01132.t1 | Aspi01Gene01132 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0492.g073535 | No alias | not classified & original description: CDS=381-2006 | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g11231 | No alias | RNA editing factor *(POCO) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.17G065300.1 | Ceric.17G065300 | RNA editing factor *(POCO) & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.31G052700.1 | Ceric.31G052700 | RNA editing factor *(POCO) & original description:... | 0.05 | OrthoFinder output from all 47 species | |
| Dac_g21533 | No alias | RNA editing factor *(POCO) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g14866 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g24432 | No alias | RNA editing factor *(POCO) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Gb_03507 | No alias | Pentatricopeptide repeat-containing protein At4g02820,... | 0.07 | OrthoFinder output from all 47 species | |
| Gb_03508 | No alias | Pentatricopeptide repeat-containing protein At4g02820,... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_09452 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.07 | OrthoFinder output from all 47 species | |
| Gb_14211 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_14212 | No alias | RNA editing factor (POCO) | 0.03 | OrthoFinder output from all 47 species | |
| Gb_14576 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_20238 | No alias | RNA editing factor (POCO) | 0.05 | OrthoFinder output from all 47 species | |
| Gb_27873 | No alias | RNA editing factor (POCO) | 0.03 | OrthoFinder output from all 47 species | |
| Gb_38114 | No alias | RNA editing factor (POCO) | 0.07 | OrthoFinder output from all 47 species | |
| LOC_Os01g17320.1 | PPR596, LOC_Os01g17320 | RNA editing factor (POCO) | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os01g19490.1 | LOC_Os01g19490 | Pentatricopeptide repeat-containing protein At4g01990,... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os02g55310.1 | LOC_Os02g55310 | Pentatricopeptide repeat-containing protein At5g27460... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os04g25410.1 | LOC_Os04g25410 | Pentatricopeptide repeat-containing protein At1g60770... | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os07g12140.1 | LOC_Os07g12140 | RNA editing factor (POCO) | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os07g40750.1 | LOC_Os07g40750 | Pentatricopeptide repeat-containing protein At4g21705,... | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os10g35730.1 | LOC_Os10g35730 | Pentatricopeptide repeat-containing protein At4g02820,... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os10g35750.1 | LOC_Os10g35750 | Pentatricopeptide repeat-containing protein At2g20710,... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os10g35760.2 | LOC_Os10g35760 | Pentatricopeptide repeat-containing protein At2g20710,... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os12g34340.1 | LOC_Os12g34340 | Pentatricopeptide repeat-containing protein At4g02820,... | 0.03 | OrthoFinder output from all 47 species | |
| MA_100637g0010 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.05 | OrthoFinder output from all 47 species | |
| MA_10431989g0010 | No alias | RNA editing factor (POCO) | 0.05 | OrthoFinder output from all 47 species | |
| MA_10435629g0010 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.04 | OrthoFinder output from all 47 species | |
| MA_128872g0020 | No alias | Pentatricopeptide repeat-containing protein At1g02150... | 0.04 | OrthoFinder output from all 47 species | |
| MA_170161g0010 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.03 | OrthoFinder output from all 47 species | |
| MA_29806g0010 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.03 | OrthoFinder output from all 47 species | |
| MA_492314g0010 | No alias | RNA editing factor (POCO) | 0.05 | OrthoFinder output from all 47 species | |
| MA_7558g0010 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.02 | OrthoFinder output from all 47 species | |
| MA_94340g0010 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.04 | OrthoFinder output from all 47 species | |
| MA_9997953g0010 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g31351 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g25307 | PPR596 | RNA editing factor *(POCO) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g29727 | No alias | RNA editing factor *(POCO) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Smo413483 | No alias | Pentatricopeptide repeat-containing protein At1g80270,... | 0.03 | OrthoFinder output from all 47 species | |
| Smo420704 | No alias | Pentatricopeptide repeat-containing protein At1g80270,... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc01g079320.4.1 | Solyc01g079320 | Pentatricopeptide repeat-containing protein At1g02370,... | 0.08 | OrthoFinder output from all 47 species | |
| Solyc02g078330.3.1 | Solyc02g078330 | Pentatricopeptide repeat-containing protein At2g20710,... | 0.05 | OrthoFinder output from all 47 species | |
| Solyc02g078350.3.1 | Solyc02g078350 | Pentatricopeptide repeat-containing protein At4g21705,... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc06g071900.3.1 | Solyc06g071900 | Pentatricopeptide repeat-containing protein At1g07590,... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc07g054090.3.1 | Solyc07g054090 | Pentatricopeptide repeat-containing protein At2g20710,... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc11g006380.2.1 | Solyc11g006380 | Pentatricopeptide repeat-containing protein At1g60770... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc12g020050.2.1 | PPR596, Solyc12g020050 | RNA editing factor (POCO) | 0.05 | OrthoFinder output from all 47 species | |
| Tin_g14511 | No alias | RNA ediTing factor *(POCO) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g37476 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e012594_P001 | Zm00001e012594 | Pentatricopeptide repeat-containing protein At4g21705,... | 0.06 | OrthoFinder output from all 47 species | |
| Zm00001e026211_P002 | Zm00001e026211 | Pentatricopeptide repeat-containing protein At1g02370,... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e036620_P001 | Zm00001e036620 | Pentatricopeptide repeat-containing protein At1g60770... | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e039746_P002 | Zm00001e039746 | Pentatricopeptide repeat-containing protein At4g02820,... | 0.06 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001522 | pseudouridine synthesis | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
| MF | GO:0005198 | structural molecule activity | IEP | HCCA |
| CC | GO:0005840 | ribosome | IEP | HCCA |
| BP | GO:0006412 | translation | IEP | HCCA |
| BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| BP | GO:0009451 | RNA modification | IEP | HCCA |
| MF | GO:0009982 | pseudouridine synthase activity | IEP | HCCA |
| BP | GO:0016485 | protein processing | IEP | HCCA |
| MF | GO:0016853 | isomerase activity | IEP | HCCA |
| MF | GO:0016866 | intramolecular transferase activity | IEP | HCCA |
| BP | GO:0019538 | protein metabolic process | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
| BP | GO:0043603 | amide metabolic process | IEP | HCCA |
| BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| BP | GO:0051604 | protein maturation | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
| No external refs found! |