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  5. GSVIVT01020068001

GSVIVT01020068001


Description : Cell wall.pectin.modification and degradation.pectate lyase


Gene families : OG0000492 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000492_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01020068001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00123190 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.09 OrthoFinder output from all 47 species
AMTR_s00039p00186640 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.04 OrthoFinder output from all 47 species
AMTR_s00078p00106380 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.2 OrthoFinder output from all 47 species
AT1G14420 AT59 Pectate lyase family protein 0.16 OrthoFinder output from all 47 species
AT1G67750 No alias Pectate lyase family protein 0.04 OrthoFinder output from all 47 species
AT2G02720 No alias Pectate lyase family protein 0.14 OrthoFinder output from all 47 species
AT3G01270 No alias Pectate lyase family protein 0.08 OrthoFinder output from all 47 species
AT3G07010 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G24230 No alias Pectate lyase family protein 0.06 OrthoFinder output from all 47 species
AT3G24670 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G09280 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G15110 No alias Pectate lyase family protein 0.16 OrthoFinder output from all 47 species
AT5G55720 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G63180 No alias Pectin lyase-like superfamily protein 0.01 OrthoFinder output from all 47 species
Adi_g013762 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g27583 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g13674 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g21580 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g63228 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene17935.t1 Aspi01Gene17935 EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0008.g011291 No alias EC_4.2 carbon-oxygen lyase & original description: CDS=272-1573 0.02 OrthoFinder output from all 47 species
Azfi_s0032.g024858 No alias EC_4.2 carbon-oxygen lyase & original description: CDS=1-1242 0.03 OrthoFinder output from all 47 species
Azfi_s0054.g033628 RHS14 EC_4.2 carbon-oxygen lyase & original description: CDS=168-1388 0.04 OrthoFinder output from all 47 species
Azfi_s0123.g048430 No alias EC_4.2 carbon-oxygen lyase & original description: CDS=163-1392 0.03 OrthoFinder output from all 47 species
Ceric.14G053300.1 Ceric.14G053300 EC_4.2 carbon-oxygen lyase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.22G068000.1 Ceric.22G068000 EC_4.2 carbon-oxygen lyase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.30G051100.1 RHS14, Ceric.30G051100 EC_4.2 carbon-oxygen lyase & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.30G051200.1 RHS14, Ceric.30G051200 EC_4.2 carbon-oxygen lyase & original description:... 0.08 OrthoFinder output from all 47 species
Dac_g11741 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g12057 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g39421 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g40377 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g46389 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g03656 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g05863 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g15970 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01016209001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.01 OrthoFinder output from all 47 species
GSVIVT01028548001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.05 OrthoFinder output from all 47 species
GSVIVT01029048001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.06 OrthoFinder output from all 47 species
Gb_19802 No alias pectate lyase 0.04 OrthoFinder output from all 47 species
LOC_Os02g12300.1 AT59, LOC_Os02g12300 pectate lyase 0.13 OrthoFinder output from all 47 species
LOC_Os04g05050.1 LOC_Os04g05050 pectate lyase 0.05 OrthoFinder output from all 47 species
LOC_Os06g05209.1 LOC_Os06g05209 pectate lyase 0.14 OrthoFinder output from all 47 species
LOC_Os06g05260.1 LOC_Os06g05260 pectate lyase 0.08 OrthoFinder output from all 47 species
LOC_Os06g05272.1 AT59, LOC_Os06g05272 pectate lyase 0.02 OrthoFinder output from all 47 species
LOC_Os06g38510.2 LOC_Os06g38510 pectate lyase 0.1 OrthoFinder output from all 47 species
Len_g10584 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Len_g50589 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
MA_10353668g0010 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_103716g0010 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_203992g0010 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_52869g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
MA_66914g0010 No alias pectate lyase 0.05 OrthoFinder output from all 47 species
Mp8g00770.1 No alias pectate lyase 0.04 OrthoFinder output from all 47 species
Mp8g10190.1 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
Msp_g38292 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g43436 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g26214 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g26215 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g28391 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g41164 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g41165 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g41450 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g05797 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06396 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g27978 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003136 No alias EC_4.2 carbon-oxygen lyase & original description: CDS=1-1299 0.03 OrthoFinder output from all 47 species
Sam_g03369 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16922 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Smo407495 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.05 OrthoFinder output from all 47 species
Solyc01g010740.4.1 AT59, Solyc01g010740 pectate lyase 0.02 OrthoFinder output from all 47 species
Solyc02g031960.3.1 Solyc02g031960 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Solyc02g087670.3.1 Solyc02g087670 pectate lyase 0.06 OrthoFinder output from all 47 species
Solyc02g093580.4.1 Solyc02g093580 pectate lyase 0.06 OrthoFinder output from all 47 species
Solyc03g058890.4.1 AT59, Solyc03g058890 pectate lyase 0.18 OrthoFinder output from all 47 species
Solyc03g058910.3.1 AT59, Solyc03g058910 pectate lyase 0.14 OrthoFinder output from all 47 species
Solyc03g111690.4.1 Solyc03g111690 pectate lyase 0.04 OrthoFinder output from all 47 species
Solyc03g113150.3.1 AT59, Solyc03g113150 pectate lyase 0.06 OrthoFinder output from all 47 species
Solyc05g007080.4.1 AT59, Solyc05g007080 pectate lyase 0.18 OrthoFinder output from all 47 species
Solyc06g071020.3.1 Solyc06g071020 pectate lyase 0.1 OrthoFinder output from all 47 species
Solyc06g071840.3.1 Solyc06g071840 Probable pectate lyase 22 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Solyc09g061890.3.1 Solyc09g061890 pectate lyase 0.03 OrthoFinder output from all 47 species
Spa_g31391 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g40115 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g41522 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g47003 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g57258 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g07683 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g09317 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e004654_P002 Zm00001e004654 pectate lyase 0.03 OrthoFinder output from all 47 species
Zm00001e024959_P001 AT59, Zm00001e024959 pectate lyase 0.08 OrthoFinder output from all 47 species
Zm00001e037311_P001 Zm00001e037311 pectate lyase 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002022 Pec_lyase 174 354
IPR007524 Pec_lyase_N 27 79
No external refs found!