GSVIVT01019807001


Description : RNA biosynthesis.transcriptional activation.LIM transcription factor


Gene families : OG0000440 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000440_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01019807001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00259550 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.LIM... 0.09 OrthoFinder output from all 47 species
AMTR_s00065p00168710 WLIM1,... RNA biosynthesis.transcriptional activation.LIM... 0.04 OrthoFinder output from all 47 species
AT1G01780 No alias GATA type zinc finger transcription factor family protein 0.03 OrthoFinder output from all 47 species
AT1G10200 WLIM1 GATA type zinc finger transcription factor family protein 0.03 OrthoFinder output from all 47 species
AT2G45800 No alias GATA type zinc finger transcription factor family protein 0.09 OrthoFinder output from all 47 species
AT3G61230 No alias GATA type zinc finger transcription factor family protein 0.07 OrthoFinder output from all 47 species
Ala_g19801 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11262 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g21791 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g01000 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g10165 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g12127 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g04896 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.07G010100.1 Ceric.07G010100 LIM-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g04473 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g13344 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g30378 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g39812 No alias LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g04716 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g27988 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01007812001 WLIM1 RNA biosynthesis.transcriptional activation.LIM... 0.06 OrthoFinder output from all 47 species
Gb_11447 WLIM1 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
LOC_Os02g42820.1 LOC_Os02g42820 transcription factor (LIM) 0.09 OrthoFinder output from all 47 species
LOC_Os04g45010.1 LOC_Os04g45010 transcription factor (LIM) 0.08 OrthoFinder output from all 47 species
LOC_Os10g35930.1 LOC_Os10g35930 transcription factor (LIM) 0.07 OrthoFinder output from all 47 species
LOC_Os12g32620.1 WLIM1, LOC_Os12g32620 transcription factor (LIM) 0.05 OrthoFinder output from all 47 species
Len_g22091 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g05819 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g21255 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_824463g0010 WLIM1 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
Msp_g03006 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g10239 WLIM1 LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g06617 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g08756 WLIM1 LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g16712 WLIM1 LIM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g25515 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g36153 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g04414 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g01788 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g094320.3.1 Solyc01g094320 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
Solyc08g007940.4.1 Solyc08g007940 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
Solyc08g080740.3.1 Solyc08g080740 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
Solyc10g017520.3.1 Solyc10g017520 transcription factor (LIM) 0.04 OrthoFinder output from all 47 species
Solyc11g044740.2.1 WLIM1, Solyc11g044740 transcription factor (LIM) 0.05 OrthoFinder output from all 47 species
Spa_g01071 No alias LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e007423_P001 Zm00001e007423 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
Zm00001e015234_P001 Zm00001e015234 transcription factor (LIM) 0.05 OrthoFinder output from all 47 species
Zm00001e023098_P001 Zm00001e023098 transcription factor (LIM) 0.07 OrthoFinder output from all 47 species
Zm00001e041310_P001 Zm00001e041310 transcription factor (LIM) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0004857 enzyme inhibitor activity IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010215 cellulose microfibril organization IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016049 cell growth IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0030198 extracellular matrix organization IEP HCCA
MF GO:0030570 pectate lyase activity IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
CC GO:0031225 obsolete anchored component of membrane IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0040007 growth IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0043062 extracellular structure organization IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
InterPro domains Description Start Stop
IPR001781 Znf_LIM 10 65
IPR001781 Znf_LIM 102 157
No external refs found!