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  5. GSVIVT01019351001

GSVIVT01019351001


Description : Putative disease resistance protein RGA4 OS=Solanum bulbocastanum


Gene families : OG0000694 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000694_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01019351001
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
AT3G14470 No alias NB-ARC domain-containing disease resistance protein 0.04 OrthoFinder output from all 47 species
GSVIVT01001399001 RLK1 G-type lectin S-receptor-like serine/threonine-protein... 0.03 OrthoFinder output from all 47 species
GSVIVT01007029001 No alias Putative disease resistance RPP13-like protein 1... 0.01 OrthoFinder output from all 47 species
GSVIVT01013310001 No alias Putative disease resistance RPP13-like protein 1... 0.02 OrthoFinder output from all 47 species
GSVIVT01013533001 No alias Putative disease resistance RPP13-like protein 1... 0.01 OrthoFinder output from all 47 species
GSVIVT01022856001 No alias Putative disease resistance RPP13-like protein 1... 0.04 OrthoFinder output from all 47 species
GSVIVT01022933001 No alias Putative disease resistance protein At3g14460... 0.01 OrthoFinder output from all 47 species
GSVIVT01022937001 No alias Putative disease resistance RPP13-like protein 1... 0.01 OrthoFinder output from all 47 species
GSVIVT01022961001 No alias Putative disease resistance RPP13-like protein 1... 0.03 OrthoFinder output from all 47 species
GSVIVT01022962001 No alias Putative disease resistance protein RGA3 OS=Solanum bulbocastanum 0.01 OrthoFinder output from all 47 species
GSVIVT01031998001 No alias Putative disease resistance protein At3g14460... 0.04 OrthoFinder output from all 47 species
GSVIVT01032204001 No alias Putative disease resistance protein RGA4 OS=Solanum bulbocastanum 0.04 OrthoFinder output from all 47 species
GSVIVT01036657001 No alias Putative disease resistance RPP13-like protein 1... 0.09 OrthoFinder output from all 47 species
LOC_Os01g15580.1 LOC_Os01g15580 Putative disease resistance protein RGA1 OS=Solanum... 0.02 OrthoFinder output from all 47 species
LOC_Os03g20840.1 LOC_Os03g20840 Putative disease resistance protein RGA4 OS=Solanum... 0.02 OrthoFinder output from all 47 species
LOC_Os03g38330.1 LOC_Os03g38330 Putative disease resistance RPP13-like protein 1... 0.01 OrthoFinder output from all 47 species
LOC_Os06g41480.1 LOC_Os06g41480 Putative disease resistance protein RGA3 OS=Solanum... 0.02 OrthoFinder output from all 47 species
LOC_Os06g47800.1 LOC_Os06g47800 Putative disease resistance protein RGA1 OS=Solanum... 0.04 OrthoFinder output from all 47 species
LOC_Os08g43010.1 LOC_Os08g43010 Putative disease resistance protein RGA1 OS=Solanum... 0.02 OrthoFinder output from all 47 species
LOC_Os09g14490.1 LOC_Os09g14490 Putative disease resistance RPP13-like protein 1... 0.04 OrthoFinder output from all 47 species
LOC_Os10g07400.2 LOC_Os10g07400 Putative disease resistance protein RGA1 OS=Solanum... 0.04 OrthoFinder output from all 47 species
LOC_Os12g29160.1 LOC_Os12g29160 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Pir_g48709 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc11g068360.1.1 Solyc11g068360 Putative disease resistance RPP13-like protein 1... 0.05 OrthoFinder output from all 47 species
Solyc11g069620.3.1 Solyc11g069620 Putative disease resistance RPP13-like protein 1... 0.03 OrthoFinder output from all 47 species
Zm00001e031999_P001 Zm00001e031999 Putative disease resistance protein RGA3 OS=Solanum... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0020037 heme binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002182 NB-ARC 3 155
IPR001611 Leu-rich_rpt 313 366
No external refs found!