GSVIVT01019040001


Description : Pentatricopeptide repeat-containing protein At5g66631 OS=Arabidopsis thaliana


Gene families : OG0001104 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001104_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01019040001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00038p00179320 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g66631... 0.02 OrthoFinder output from all 47 species
AT2G01360 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 OrthoFinder output from all 47 species
AT2G01390 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G66631 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 OrthoFinder output from all 47 species
Adi_g014971 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g015741 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g023647 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g089268 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g117048 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g06759 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g07294 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g10282 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g12238 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g13606 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g14119 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g14389 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g02569 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05066 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18254 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g20063 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g02060 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g17323 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g05278 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09139 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene03551.t1 Aspi01Gene03551 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene11767.t1 Aspi01Gene11767 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene21360.t1 Aspi01Gene21360 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene70936.t1 Aspi01Gene70936 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g009714 No alias not classified & original description: CDS=1-2130 0.02 OrthoFinder output from all 47 species
Cba_g02696 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g14176 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g17130 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.01G061400.1 Ceric.01G061400 not classified & original description: pacid=50592672... 0.05 OrthoFinder output from all 47 species
Ceric.03G036200.1 Ceric.03G036200 not classified & original description: pacid=50571952... 0.01 OrthoFinder output from all 47 species
Ceric.11G091600.1 Ceric.11G091600 not classified & original description: pacid=50596008... 0.05 OrthoFinder output from all 47 species
Ceric.16G010400.1 Ceric.16G010400 not classified & original description: pacid=50589761... 0.02 OrthoFinder output from all 47 species
Ceric.19G017900.1 Ceric.19G017900 not classified & original description: pacid=50576444... 0.02 OrthoFinder output from all 47 species
Ceric.26G072600.1 EMB2750, Ceric.26G072600 not classified & original description: pacid=50599096... 0.02 OrthoFinder output from all 47 species
Ceric.39G058300.1 Ceric.39G058300 not classified & original description: pacid=50582561... 0.01 OrthoFinder output from all 47 species
Dac_g12820 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g22799 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g34945 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g39899 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g06427 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g09922 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g07946 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g09775 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g30615 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g01567 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g02893 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g15186 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g19050 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01019029001 No alias Pentatricopeptide repeat-containing protein At2g01390... 0.04 OrthoFinder output from all 47 species
Gb_11322 No alias Pentatricopeptide repeat-containing protein At2g01390... 0.04 OrthoFinder output from all 47 species
Gb_32462 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.01 OrthoFinder output from all 47 species
Gb_36347 No alias Pentatricopeptide repeat-containing protein At5g66631... 0.04 OrthoFinder output from all 47 species
LOC_Os01g07340.1 LOC_Os01g07340 Pentatricopeptide repeat-containing protein At5g66631... 0.02 OrthoFinder output from all 47 species
Len_g03366 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g08870 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g17138 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g59567 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g02323 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05606 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g15023 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g21649 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g22466 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g24872 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g27946 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_89328g0010 No alias Pentatricopeptide repeat-containing protein At5g66631... 0.03 OrthoFinder output from all 47 species
Msp_g06308 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g15826 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g25744 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g01326 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g19603 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Nbi_g38419 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g08385 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g09735 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g09746 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g59517 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g10079 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ppi_g08931 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g10227 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g15128 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g17969 CRM3, HCF152 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g32274 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56357 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003004 No alias not classified & original description: CDS=1-2094 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0054.g014226 No alias not classified & original description: CDS=1-2088 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017150 No alias not classified & original description: CDS=1-2094 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0074.g017180 CRM3, HCF152 not classified & original description: CDS=1-2193 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0089.g018721 No alias not classified & original description: CDS=1-2364 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0102.g019915 No alias not classified & original description: CDS=1-2391 0.01 OrthoFinder output from all 47 species
Sam_g09085 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g10479 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g12526 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g25243 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g27171 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g065510.1.1 Solyc02g065510 Pentatricopeptide repeat-containing protein At5g66631... 0.03 OrthoFinder output from all 47 species
Spa_g09030 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g17204 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g11567 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g11870 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g13511 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Tin_g19487 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e016802_P001 Zm00001e016802 Pentatricopeptide repeat-containing protein At5g66631... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 172 217
IPR002885 Pentatricopeptide_repeat 523 570
IPR002885 Pentatricopeptide_repeat 458 482
No external refs found!