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  5. GSVIVT01018805001

GSVIVT01018805001


Description : Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana


Gene families : OG0000677 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000677_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01018805001
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00027p00222730 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AMTR_s00087p00144100 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AT2G44710 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.08 OrthoFinder output from all 47 species
Adi_g068963 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Adi_g075764 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g107812 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g32982 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g14895 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g20494 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07409 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07470 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g03583 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07392 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g04938 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g68576 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0182.g056457 No alias not classified & original description: CDS=29-2320 0.04 OrthoFinder output from all 47 species
Cba_g13364 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.03G033700.1 Ceric.03G033700 not classified & original description: pacid=50572646... 0.05 OrthoFinder output from all 47 species
Dcu_g01827 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Dcu_g01919 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g10166 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g11203 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g05040 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os04g45930.3 LOC_Os04g45930 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
LOC_Os07g27110.1 LOC_Os07g27110 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os10g08570.1 LOC_Os10g08570 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Lfl_g06685 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g12296 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g38057 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_169053g0010 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Msp_g48146 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g02437 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g13061 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g16078 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g18521 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g13590 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g22231 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g52296 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g35273 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g088800.4.1 Solyc01g088800 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
Solyc02g062290.2.1 Solyc02g062290 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Solyc10g062180.2.1 Solyc10g062180 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Solyc10g062340.2.1 Solyc10g062340 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Solyc10g076870.2.1 Solyc10g076870 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.12 OrthoFinder output from all 47 species
Spa_g07984 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g47784 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g12919 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e007365_P001 Zm00001e007365 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Zm00001e041355_P001 Zm00001e041355 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 328 396
IPR000504 RRM_dom 506 571
IPR000504 RRM_dom 408 475
No external refs found!