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  5. GSVIVT01018514001

GSVIVT01018514001


Description : Probable rRNA-processing protein EBP2 homolog OS=Arabidopsis thaliana


Gene families : OG0004650 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004650_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01018514001
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0705.g082696 No alias pre-60S ribosomal subunit assembly factor *(EBP2) &... 0.03 OrthoFinder output from all 47 species
Ceric.28G019100.1 Ceric.28G019100 pre-60S ribosomal subunit assembly factor *(EBP2) &... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000880.12 No alias Probable rRNA-processing protein EBP2 homolog... 0.09 OrthoFinder output from all 47 species
Cre07.g351750 No alias Probable rRNA-processing protein EBP2 homolog... 0.1 OrthoFinder output from all 47 species
Dac_g09923 No alias pre-60S ribosomal subunit assembly factor *(EBP2) &... 0.03 OrthoFinder output from all 47 species
LOC_Os07g29320.1 LOC_Os07g29320 pre-60S ribosomal subunit assembly factor (EBP2) 0.04 OrthoFinder output from all 47 species
MA_138177g0010 No alias pre-60S ribosomal subunit assembly factor (EBP2) 0.07 OrthoFinder output from all 47 species
Mp3g18310.1 No alias pre-60S ribosomal subunit assembly factor (EBP2) 0.17 OrthoFinder output from all 47 species
Nbi_g17719 No alias pre-60S ribosomal subunit assembly factor *(EBP2) &... 0.03 OrthoFinder output from all 47 species
Pp3c6_25210V3.1 Pp3c6_25210 rRNA processing protein-related 0.02 OrthoFinder output from all 47 species
Sam_g25020 No alias pre-60S ribosomal subunit assembly factor *(EBP2) &... 0.02 OrthoFinder output from all 47 species
Solyc01g006090.3.1 Solyc01g006090 pre-60S ribosomal subunit assembly factor (EBP2) 0.09 OrthoFinder output from all 47 species
Solyc01g006170.4.1 Solyc01g006170 pre-60S ribosomal subunit assembly factor (EBP2) 0.12 OrthoFinder output from all 47 species
Spa_g08730 No alias pre-60S ribosomal subunit assembly factor *(EBP2) &... 0.02 OrthoFinder output from all 47 species
Zm00001e010357_P001 Zm00001e010357 pre-60S ribosomal subunit assembly factor (EBP2) 0.06 OrthoFinder output from all 47 species
Zm00001e013941_P001 Zm00001e013941 pre-60S ribosomal subunit assembly factor (EBP2) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR008610 Ebp2 68 182
No external refs found!