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  5. GSVIVT01018506001

GSVIVT01018506001 (ATCPSF160, CPSF160)


Aliases : ATCPSF160, CPSF160

Description : RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.CPSF160/Yhh1 component


Gene families : OG0003336 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003336_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01018506001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00037520 ATCPSF160,... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.08 OrthoFinder output from all 47 species
AT5G51660 ATCPSF160, CPSF160 cleavage and polyadenylation specificity factor 160 0.07 OrthoFinder output from all 47 species
Ala_g19211 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.04 OrthoFinder output from all 47 species
Als_g01205 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.04 OrthoFinder output from all 47 species
Aop_g06976 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Aspi01Gene55703.t1 ATCPSF160,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g37162 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Ceric.05G035200.1 ATCPSF160,... component *(CPSF160/Yhh1) of Cleavage and... 0.07 OrthoFinder output from all 47 species
Cre13.g573450 ATCPSF160, CPSF160 Probable cleavage and polyadenylation specificity factor... 0.03 OrthoFinder output from all 47 species
Ehy_g15463 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
LOC_Os04g18010.1 ATCPSF160,... component CPSF160/Yhh1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Len_g23442 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Lfl_g16583 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
MA_10435523g0020 ATCPSF160, CPSF160 Cleavage and polyadenylation specificity factor subunit... 0.03 OrthoFinder output from all 47 species
MA_169369g0010 ATCPSF160, CPSF160 Cleavage and polyadenylation specificity factor subunit... 0.03 OrthoFinder output from all 47 species
Mp2g06280.1 ATCPSF160, CPSF160 component CPSF160/Yhh1 of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Nbi_g12582 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Ore_g06584 ATCPSF160, CPSF160 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo82277 ATCPSF160, CPSF160 RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.06 OrthoFinder output from all 47 species
Solyc03g007100.3.1 ATCPSF160,... component CPSF160/Yhh1 of Cleavage and Polyadenylation... 0.12 OrthoFinder output from all 47 species
Spa_g06166 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Tin_g41718 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Zm00001e008515_P003 ATCPSF160,... component CPSF160/Yhh1 of Cleavage and Polyadenylation... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004871 Cleavage/polyA-sp_fac_asu_C 1080 1413
No external refs found!