- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : RDO4, HUB1
Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-HCa-type E3 ligase
Gene families : OG0001584 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001584_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G55250 | HUB2 | histone mono-ubiquitination 2 | 0.09 | OrthoFinder output from all 47 species | |
| AT2G44950 | RDO4, HUB1 | histone mono-ubiquitination 1 | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g010133 | RDO4, HUB1 | E3 ubiquitin ligase *(HUB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g059356 | RDO4, HUB1 | E3 ubiquitin ligase *(HUB) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g059765 | HUB2 | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g088508 | RDO4, HUB1 | E3 ubiquitin ligase *(HUB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g104160 | RDO4, HUB1 | E3 ubiquitin ligase *(HUB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g104742 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aev_g20568 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g02632 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Ala_g13983 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Als_g01150 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Aob_g02332 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g09718 | RDO4, HUB1 | E3 ubiquitin ligase *(HUB) & original description: none | 0.1 | OrthoFinder output from all 47 species | |
| Cba_g10519 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g32079 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.14G031800.1 | RDO4, HUB1,... | E3 ubiquitin ligase *(HUB) & original description:... | 0.09 | OrthoFinder output from all 47 species | |
| Ceric.21G031900.1 | HUB2, Ceric.21G031900 | E3 ubiquitin ligase *(HUB) & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000169.18 | HUB2 | Protein degradation.peptide tagging.Ubiquitin... | 0.02 | OrthoFinder output from all 47 species | |
| Cre14.g625802 | No alias | Protein degradation.peptide tagging.Ubiquitin... | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g03836 | RDO4, HUB1 | E3 ubiquitin ligase *(HUB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g04023 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Dcu_g04109 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Gb_15023 | HUB2 | RING-HC-class E3 ligase | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os04g46450.1 | RDO4, HUB1,... | RING-HC-class E3 ligase | 0.04 | OrthoFinder output from all 47 species | |
| Len_g08188 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Len_g12516 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Lfl_g11288 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| MA_10430809g0020 | HUB2 | RING-HC-class E3 ligase | 0.09 | OrthoFinder output from all 47 species | |
| MA_10433221g0010 | RDO4, HUB1 | RING-HC-class E3 ligase | 0.02 | OrthoFinder output from all 47 species | |
| Mp6g03540.1 | RDO4, HUB1 | RING-HC-class E3 ligase | 0.05 | OrthoFinder output from all 47 species | |
| Msp_g15420 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g35898 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g10428 | RDO4, HUB1 | E3 ubiquitin ligase *(HUB) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g01320 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ppi_g07599 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0012.g005579 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: CDS=141-2873 | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g12359 | No alias | E3 ubiquitin ligase *(HUB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g35279 | No alias | E3 ubiquitin ligase *(HUB) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Smo175555 | HUB2 | Protein degradation.peptide tagging.Ubiquitin... | 0.09 | OrthoFinder output from all 47 species | |
| Solyc01g006040.3.1 | HUB2, Solyc01g006040 | RING-HC-class E3 ligase | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g08099 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Tin_g06090 | HUB2 | E3 ubiquiTin ligase *(HUB) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g15227 | RDO4, HUB1 | E3 ubiquiTin ligase *(HUB) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Zm00001e001968_P003 | HUB2, Zm00001e001968 | RING-HC-class E3 ligase | 0.01 | OrthoFinder output from all 47 species | |
| Zm00001e013143_P005 | RDO4, HUB1,... | RING-HC-class E3 ligase | 0.12 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0004518 | nuclease activity | IEP | HCCA |
| MF | GO:0004540 | ribonuclease activity | IEP | HCCA |
| MF | GO:0004721 | phosphoprotein phosphatase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| CC | GO:0005634 | nucleus | IEP | HCCA |
| MF | GO:0008138 | protein tyrosine/serine/threonine phosphatase activity | IEP | HCCA |
| BP | GO:0016311 | dephosphorylation | IEP | HCCA |
| MF | GO:0016788 | hydrolase activity, acting on ester bonds | IEP | HCCA |
| MF | GO:0016791 | phosphatase activity | IEP | HCCA |
| CC | GO:0043227 | membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |