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  5. GSVIVT01018109001

GSVIVT01018109001 (ATCFM3A, CFM3A)


Aliases : ATCFM3A, CFM3A

Description : RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.CFM3-type splicing factor


Gene families : OG0001162 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001162_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01018109001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00265220 ATCFM3A, CFM3A,... RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
AMTR_s00028p00245370 ATCFM2, CFM2,... RNA processing.organelle machineries.RNA... 0.05 OrthoFinder output from all 47 species
AMTR_s00045p00114550 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
AMTR_s00079p00107040 EMB1865,... CRM-domain containing factor CFM3,... 0.05 OrthoFinder output from all 47 species
AT3G01370 ATCFM2, CFM2 CRM family member 2 0.08 OrthoFinder output from all 47 species
AT3G18390 EMB1865 CRS1 / YhbY (CRM) domain-containing protein 0.08 OrthoFinder output from all 47 species
AT3G23070 ATCFM3A, CFM3A CRM family member 3A 0.13 OrthoFinder output from all 47 species
AT4G29750 No alias CRS1 / YhbY (CRM) domain-containing protein 0.08 OrthoFinder output from all 47 species
AT5G16180 ATCRS1, CRS1 ortholog of maize chloroplast splicing factor CRS1 0.04 OrthoFinder output from all 47 species
Adi_g022878 ATCFM3A, CFM3A not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g059394 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g21267 ATCFM2, CFM2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g58822 ATCFM2, CFM2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g19644 ATCFM2, CFM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0015.g013833 ATCFM2, CFM2 not classified & original description: CDS=1-3243 0.03 OrthoFinder output from all 47 species
Ceric.05G053300.1 ATCFM2, CFM2,... not classified & original description: pacid=50577844... 0.1 OrthoFinder output from all 47 species
Ceric.23G047600.1 ATCFM2, CFM2,... not classified & original description: pacid=50611491... 0.07 OrthoFinder output from all 47 species
Ceric.31G056300.1 ATCFM2, CFM2,... not classified & original description: pacid=50573909... 0.07 OrthoFinder output from all 47 species
Cre14.g630301 No alias No description available 0.03 OrthoFinder output from all 47 species
Dde_g25274 ATCFM2, CFM2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g12628 EMB1865 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g21472 ATCFM2, CFM2 plastidial RNA splicing factor *(CFM2) & original... 0.07 OrthoFinder output from all 47 species
Gb_18301 ATCFM2, CFM2 CRM-domain containing factor CFM2, chloroplastic... 0.05 OrthoFinder output from all 47 species
Gb_18303 ATCFM2, CFM2 CRM-domain containing factor CFM2, chloroplastic... 0.06 OrthoFinder output from all 47 species
Gb_37638 ATCFM3A, CFM3A CFM2-type plastidial RNA splicing factor. CFM3-type... 0.06 OrthoFinder output from all 47 species
Gb_39217 EMB1865 CFM2-type plastidial RNA splicing factor 0.03 OrthoFinder output from all 47 species
LOC_Os04g39060.2 ATCFM2, CFM2,... CRM-domain containing factor CFM2, chloroplastic... 0.09 OrthoFinder output from all 47 species
LOC_Os05g47850.1 EMB1865, LOC_Os05g47850 CRM-domain containing factor CFM3,... 0.04 OrthoFinder output from all 47 species
LOC_Os08g27150.1 ATCRS1, CRS1,... CRS1 plastidial RNA splicing factor 0.03 OrthoFinder output from all 47 species
LOC_Os09g19850.1 LOC_Os09g19850 CRM-domain containing factor CFM3,... 0.05 OrthoFinder output from all 47 species
LOC_Os11g37990.1 ATCFM3A, CFM3A,... CFM3-type plastidial RNA splicing factor 0.07 OrthoFinder output from all 47 species
Len_g08834 ATCFM2, CFM2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g55562 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g03478 ATCFM2, CFM2 plastidial RNA splicing factor *(CFM2) & original... 0.03 OrthoFinder output from all 47 species
MA_10233916g0010 ATCFM2, CFM2 CRM-domain containing factor CFM2, chloroplastic... 0.04 OrthoFinder output from all 47 species
MA_10432072g0010 ATCFM3A, CFM3A CFM2-type plastidial RNA splicing factor 0.1 OrthoFinder output from all 47 species
MA_10435740g0010 EMB1865 CFM2-type plastidial RNA splicing factor 0.08 OrthoFinder output from all 47 species
MA_8161870g0010 ATCFM2, CFM2 CRM-domain containing factor CFM2, chloroplastic... 0.04 OrthoFinder output from all 47 species
Mp3g06280.1 ATCFM2, CFM2 CRM-domain containing factor CFM3,... 0.07 OrthoFinder output from all 47 species
Msp_g27066 ATCFM2, CFM2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g25479 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g46980 ATCFM3A, CFM3A not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0160.g023856 ATCFM2, CFM2 not classified & original description: CDS=91-3327 0.03 OrthoFinder output from all 47 species
Sam_g28510 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g52089 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo120007 No alias CRM-domain containing factor CFM3,... 0.05 OrthoFinder output from all 47 species
Smo20706 EMB1865 CRM-domain containing factor CFM3,... 0.04 OrthoFinder output from all 47 species
Solyc03g119450.3.1 EMB1865, Solyc03g119450 CRM-domain containing factor CFM3,... 0.06 OrthoFinder output from all 47 species
Solyc07g039500.4.1 Solyc07g039500 CRM-domain containing factor CFM3,... 0.07 OrthoFinder output from all 47 species
Solyc09g083350.3.1 ATCFM3A, CFM3A,... CFM3-type plastidial RNA splicing factor 0.1 OrthoFinder output from all 47 species
Spa_g04443 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06122 ATCFM2, CFM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e004284_P002 ATCRS1, CRS1,... CRS1 plastidial RNA splicing factor 0.03 OrthoFinder output from all 47 species
Zm00001e011272_P001 ATCFM3A, CFM3A,... CFM3-type plastidial RNA splicing factor 0.07 OrthoFinder output from all 47 species
Zm00001e032339_P002 EMB1865, Zm00001e032339 CRM-domain containing factor CFM3,... 0.06 OrthoFinder output from all 47 species
Zm00001e033939_P001 Zm00001e033939 CRM-domain containing factor CFM3,... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 646 732
IPR001890 RNA-binding_CRM 220 303
IPR001890 RNA-binding_CRM 435 516
No external refs found!