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  5. GSVIVT01018090001

GSVIVT01018090001


Description : Pentatricopeptide repeat-containing protein At3g23020 OS=Arabidopsis thaliana


Gene families : OG0006545 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006545_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01018090001
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
AT3G23020 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
Cba_g15281 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.27G000500.1 Ceric.27G000500 not classified & original description: pacid=50606226... 0.04 OrthoFinder output from all 47 species
Dac_g22039 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g09918 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os03g06710.1 LOC_Os03g06710 Pentatricopeptide repeat-containing protein At3g23020... 0.03 OrthoFinder output from all 47 species
LOC_Os07g28900.1 LOC_Os07g28900 Pentatricopeptide repeat-containing protein At1g73710... 0.03 OrthoFinder output from all 47 species
MA_10426616g0010 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.04 OrthoFinder output from all 47 species
Mp1g12860.1 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.02 OrthoFinder output from all 47 species
Smo77736 No alias Pentatricopeptide repeat-containing protein At3g23020... 0.04 OrthoFinder output from all 47 species
Solyc09g083110.3.1 Solyc09g083110 Pentatricopeptide repeat-containing protein At3g23020... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 307 337
IPR002885 Pentatricopeptide_repeat 412 442
IPR033443 PPR_long 670 820
IPR002885 Pentatricopeptide_repeat 517 560
IPR002885 Pentatricopeptide_repeat 587 630
IPR002885 Pentatricopeptide_repeat 195 242
IPR002885 Pentatricopeptide_repeat 339 384
No external refs found!