LOC_Os12g06570 (Os12g0163000, Os12g0163100)


Aliases : Os12g0163000, Os12g0163100

Description : 34.22 transport.cyclic nucleotide or calcium regulated channels Encodes a member of the cyclic nucleotide gated channel family that is asymmetrically localized to the plasma membrane at the growing tip of the pollen tube and is involved in pollen tube growth. It likely directly transduces a cNMP signal into an ion flux that can produce a localized signal capable of regulating the pollen tip-growth machinery. cyclic nucleotide-gated channel 18 (CNGC18)


Gene families : OG_01_0000081 (Gene family) Phylogenetic Tree(s): OG0000081_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os12g06570
Cluster HCCA cluster: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
AT2G28260 CNGC15, ATCNGC15 cyclic nucleotide-gated channel 15 0.02 Gene family
AT3G48010 ATCNGC16, CNGC16 cyclic nucleotide-gated channel 16 0.02 Gene family
AT5G14870 CNGC18, ATCNGC18 cyclic nucleotide-gated channel 18 0.02 Gene family
GSVIVT01014442001 No alias 34.22 transport.cyclic nucleotide or calcium regulated... 0.02 Gene family
GSVIVT01025696001 No alias 34.22 transport.cyclic nucleotide or calcium regulated... 0.02 Gene family
Solyc03g116850.3.1 Solyc03g116850.3 34.22 transport.cyclic nucleotide or calcium regulated... 0.02 Gene family
Zm00001d007925 No alias 34.22 transport.cyclic nucleotide or calcium regulated... 0.07 Gene family
Zm00001d013688 GRMZM2G077828 34.22 transport.cyclic nucleotide or calcium regulated... 0.1 Gene family
Zm00001d041309 No alias 34.22 transport.cyclic nucleotide or calcium regulated... 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEA InterProScan
BP GO:0006811 ion transport IEA InterProScan
CC GO:0016020 membrane IEA InterProScan
BP GO:0055085 transmembrane transport IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000595 cNMP-bd_dom 390 479
IPR005821 Ion_trans_dom 10 294
No external refs found!