1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01017784001

GSVIVT01017784001


Description : Acyl-CoA-binding domain-containing protein 6 OS=Oryza sativa subsp. japonica


Gene families : OG0001589 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001589_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01017784001
Cluster HCCA: Cluster_91

Target Alias Description ECC score Gene Family Method Actions
AT5G18590 No alias Galactose oxidase/kelch repeat superfamily protein 0.03 OrthoFinder output from all 47 species
Aev_g07928 ACBP4 acyl-CoA-binding protein *(ACBP4/5) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g04451 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g29359 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g04888 ACBP4 acyl-CoA-binding protein *(ACBP4/5) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19683 ACBP4 acyl-CoA-binding protein *(ACBP4/5) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os11g43590.2 LOC_Os11g43590 Acyl-CoA-binding domain-containing protein 6 OS=Oryza... 0.08 OrthoFinder output from all 47 species
LOC_Os12g35350.2 LOC_Os12g35350 Acyl-CoA-binding domain-containing protein 4... 0.03 OrthoFinder output from all 47 species
MA_110299g0010 No alias Acyl-CoA-binding domain-containing protein 6 OS=Oryza... 0.04 OrthoFinder output from all 47 species
MA_447541g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Msp_g48841 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c14_17400V3.1 ACBP4, Pp3c14_17400 acyl-CoA binding protein 4 0.01 OrthoFinder output from all 47 species
Sam_g16828 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g34509 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g067480.4.1 Solyc01g067480 Acyl-CoA-binding domain-containing protein 6 OS=Oryza... 0.09 OrthoFinder output from all 47 species
Zm00001e021071_P001 Zm00001e021071 Acyl-CoA-binding domain-containing protein 6 OS=Oryza... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR006652 Kelch_1 88 128
No external refs found!