GSVIVT01017772001

Description : RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor

Gene families : OG0000165 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000165_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01017772001

Target	Alias	Description	ECC score	Gene Family Method
AT1G61960	No alias	Mitochondrial transcription termination factor family protein	0.01	OrthoFinder output from all 47 species
Ala_g19406	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g15618	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g60921	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene64001.t1	Aspi01Gene64001	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Gb_12368	No alias	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species
Gb_31439	No alias	transcription factor (mTERF)	0.01	OrthoFinder output from all 47 species
LOC_Os06g12080.1	LOC_Os06g12080	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species
LOC_Os11g09990.1	LOC_Os11g09990	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
LOC_Os11g14130.1	LOC_Os11g14130	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
MA_192398g0010	No alias	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species
Mp3g14990.1	No alias	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
Msp_g07568	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g18127	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g08632	EMB2219	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g08853	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g24968	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002097	tRNA wobble base modification	IEP	HCCA
BP	GO:0002098	tRNA wobble uridine modification	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
BP	GO:0006400	tRNA modification	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0007275	multicellular organism development	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
MF	GO:0008483	transaminase activity	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0032502	developmental process	IEP	HCCA
CC	GO:0033588	elongator holoenzyme complex	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003690	MTERF	206	376
IPR003690	MTERF	9	184

External Links

No external refs found!

GSVIVT01017772001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation