LOC_Os04g23910.1


Description : transcription factor (MADS/AGL)


Gene families : OG_01_0000011 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000011_tree ,
OG_02_0000008 (LandPlants) Phylogenetic Tree(s): OG_02_0000008_tree ,
OG_03_0002316 (SeedPlants) Phylogenetic Tree(s): OG_03_0002316_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g23910.1
Cluster HCCA: Cluster_508

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00198520 evm_27.TU.AmTr_v1... Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana 0.05 Archaeplastida
AMTR_s00071p00198970 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AMTR_s00109p00015260 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
AT3G30260 AGL79 AGAMOUS-like 79 0.04 Archaeplastida
AT4G11880 AGL14 AGAMOUS-like 14 0.04 Archaeplastida
GSVIVT01003858001 No alias Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01003861001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.06 Archaeplastida
GSVIVT01012110001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01026207001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
Gb_12778 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Gb_16301 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Gb_28337 No alias MADS-box transcription factor 6 OS=Oryza sativa subsp.... 0.02 Archaeplastida
Gb_30604 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Gb_38920 No alias no hits & (original description: none) 0.05 Archaeplastida
Gb_38922 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
LOC_Os06g22760.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os12g21880.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_276701g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_69370g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_951956g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_95674g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_9841429g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Pp3c25_6940V3.1 No alias AGAMOUS-like 62 0.02 Archaeplastida
Solyc01g106700.3.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc02g084630.3.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc05g012020.4.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc06g069430.3.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e038096_P002 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
AT3G30260 AGL79 AGAMOUS-like 79 0.04 LandPlants
AT4G11880 AGL14 AGAMOUS-like 14 0.02 LandPlants
GSVIVT01003861001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.06 LandPlants
Gb_12778 No alias transcription factor (MADS/AGL) 0.03 LandPlants
Gb_30604 No alias transcription factor (MADS/AGL) 0.05 LandPlants
Gb_38922 No alias transcription factor (MADS/AGL) 0.06 LandPlants
LOC_Os12g21880.1 No alias transcription factor (MADS/AGL) 0.04 LandPlants
MA_10432817g0010 No alias transcription factor (MADS/AGL) 0.02 LandPlants
MA_175522g0010 No alias transcription factor (MADS/AGL) 0.02 LandPlants
MA_276701g0010 No alias transcription factor (MADS/AGL) 0.04 LandPlants
MA_951956g0010 No alias transcription factor (MADS/AGL) 0.03 LandPlants
Pp3c16_19170V3.1 No alias AGAMOUS-like 61 0.01 LandPlants
Pp3c25_6940V3.1 No alias AGAMOUS-like 62 0.01 LandPlants
Smo121275 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 LandPlants
Solyc01g106700.3.1 No alias transcription factor (MADS/AGL) 0.03 LandPlants
Solyc01g106710.1.1 No alias component MED19 of head module of MEDIATOR transcription... 0.02 LandPlants
Solyc04g005320.3.1 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Solyc05g012020.4.1 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Solyc06g069430.3.1 No alias transcription factor (MADS/AGL) 0.03 LandPlants
Zm00001e038096_P002 No alias transcription factor (MADS/AGL) 0.03 LandPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
IPR002487 TF_Kbox 85 170
No external refs found!