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  5. GSVIVT01017651001

GSVIVT01017651001


Description : DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana


Gene families : OG0000636 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000636_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01017651001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00096p00079870 ATDRH1, DRH1,... DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT3G06480 No alias DEAD box RNA helicase family protein 0.03 OrthoFinder output from all 47 species
Adi_g020036 ATDRH1, DRH1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g036389 ATDRH1, DRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08745 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.03 OrthoFinder output from all 47 species
Als_g08910 ATDRH1, DRH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18220 ATDRH1, DRH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g22206 ATDRH1, DRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33054 ATDRH1, DRH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene15248.t1 ATDRH1, DRH1,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene15248.t2 ATDRH1, DRH1,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18403.t1 ATDRH1, DRH1,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g09901 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.02 OrthoFinder output from all 47 species
Cba_g10365 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g68173 ATDRH1, DRH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.27G030300.1 ATDRH1, DRH1,... not classified & original description: pacid=50605657... 0.06 OrthoFinder output from all 47 species
Cre01.g028200 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Dcu_g10540 ATDRH1, DRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g17995 ATDRH1, DRH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01007665001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.06 OrthoFinder output from all 47 species
Len_g17375 ATDRH1, DRH1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g51090 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.03 OrthoFinder output from all 47 species
Lfl_g05034 ATDRH1, DRH1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g39840 ATDRH1, DRH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp6g12960.1 ATDRH1, DRH1 DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Msp_g09160 ATDRH1, DRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g08678 ATDRH1, DRH1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g19068 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.03 OrthoFinder output from all 47 species
Pir_g15938 ATDRH1, DRH1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g45674 ATDRH1, DRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g12189 ATDRH1, DRH1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g14840 ATDRH1, DRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24783 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.02 OrthoFinder output from all 47 species
Spa_g43704 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e011376_P001 Zm00001e011376 ATP-dependent RNA helicase-like protein DB10... 0.03 OrthoFinder output from all 47 species
Zm00001e016546_P001 Zm00001e016546 pre-mRNA splicing regulator (DDX5) 0.03 OrthoFinder output from all 47 species
Zm00001e020972_P005 ATDRH1, DRH1,... DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e025883_P002 ATDRH1, DRH1,... DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Zm00001e027719_P003 ATDRH1, DRH1,... DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001650 Helicase_C 222 330
IPR011545 DEAD/DEAH_box_helicase_dom 15 185
No external refs found!